Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2030 and Ac3H11_2031 are separated by 4 nucleotides Ac3H11_2031 and Ac3H11_2032 are separated by 122 nucleotides Ac3H11_2032 and Ac3H11_2033 overlap by 4 nucleotides
Ac3H11_2030 - General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD), at 250,996 to 253,242
_2030
Ac3H11_2031 - General secretion pathway protein N, at 253,247 to 253,987
_2031
Ac3H11_2032 - General secretion pathway protein M, at 254,110 to 254,658
_2032
Ac3H11_2033 - General secretion pathway protein L, at 254,655 to 255,950
_2033
Position (kb) 253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 252.336 kb on - strand, within Ac3H11_2030 at 252.672 kb on - strand, within Ac3H11_2030 at 252.893 kb on + strand, within Ac3H11_2030 at 252.893 kb on + strand, within Ac3H11_2030 at 252.894 kb on - strand, within Ac3H11_2030 at 252.894 kb on - strand, within Ac3H11_2030 at 252.894 kb on - strand, within Ac3H11_2030 at 253.180 kb on + strand at 253.243 kb on - strand at 253.243 kb on - strand at 253.243 kb on - strand at 254.344 kb on + strand, within Ac3H11_2032 at 254.345 kb on - strand, within Ac3H11_2032 at 254.345 kb on - strand, within Ac3H11_2032 at 254.798 kb on - strand, within Ac3H11_2033 at 254.798 kb on - strand, within Ac3H11_2033 at 254.798 kb on - strand, within Ac3H11_2033 at 254.798 kb on - strand, within Ac3H11_2033 at 254.798 kb on - strand, within Ac3H11_2033 at 254.798 kb on - strand, within Ac3H11_2033
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 252,336 - Ac3H11_2030 0.60 -1.9 252,672 - Ac3H11_2030 0.75 -2.7 252,893 + Ac3H11_2030 0.84 -2.3 252,893 + Ac3H11_2030 0.84 -0.2 252,894 - Ac3H11_2030 0.84 -1.2 252,894 - Ac3H11_2030 0.84 -1.0 252,894 - Ac3H11_2030 0.84 -2.1 253,180 + -2.8 253,243 - +1.0 253,243 - +0.9 253,243 - -0.6 254,344 + Ac3H11_2032 0.43 -1.0 254,345 - Ac3H11_2032 0.43 -1.8 254,345 - Ac3H11_2032 0.43 -1.7 254,798 - Ac3H11_2033 0.11 -1.7 254,798 - Ac3H11_2033 0.11 -2.4 254,798 - Ac3H11_2033 0.11 -0.7 254,798 - Ac3H11_2033 0.11 +0.2 254,798 - Ac3H11_2033 0.11 -0.2 254,798 - Ac3H11_2033 0.11 -0.2
Or see this region's nucleotide sequence