Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1837 and Ac3H11_1838 are separated by 88 nucleotides Ac3H11_1838 and Ac3H11_1839 overlap by 4 nucleotides Ac3H11_1839 and Ac3H11_1840 overlap by 4 nucleotides
Ac3H11_1837 - Beta-lactamase-like, at 37,139 to 38,083
_1837
Ac3H11_1838 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 38,172 to 38,561
_1838
Ac3H11_1839 - Ribokinase (EC 2.7.1.15), at 38,558 to 39,502
_1839
Ac3H11_1840 - Ribose operon repressor, at 39,499 to 40,521
_1840
Position (kb) 38
39 Strain fitness (log2 ratio) -1
0
1 at 37.267 kb on - strand, within Ac3H11_1837 at 37.267 kb on - strand, within Ac3H11_1837 at 37.267 kb on - strand, within Ac3H11_1837 at 37.333 kb on - strand, within Ac3H11_1837 at 37.333 kb on - strand, within Ac3H11_1837 at 37.356 kb on + strand, within Ac3H11_1837 at 37.357 kb on - strand, within Ac3H11_1837 at 37.744 kb on - strand, within Ac3H11_1837 at 37.744 kb on - strand, within Ac3H11_1837 at 37.755 kb on + strand, within Ac3H11_1837 at 37.755 kb on + strand, within Ac3H11_1837 at 37.756 kb on - strand, within Ac3H11_1837 at 37.756 kb on - strand, within Ac3H11_1837 at 37.923 kb on - strand, within Ac3H11_1837 at 38.102 kb on - strand at 38.784 kb on + strand, within Ac3H11_1839
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 37,267 - Ac3H11_1837 0.14 -1.1 37,267 - Ac3H11_1837 0.14 +0.1 37,267 - Ac3H11_1837 0.14 -0.8 37,333 - Ac3H11_1837 0.21 -0.4 37,333 - Ac3H11_1837 0.21 -0.8 37,356 + Ac3H11_1837 0.23 -0.8 37,357 - Ac3H11_1837 0.23 +0.7 37,744 - Ac3H11_1837 0.64 -0.3 37,744 - Ac3H11_1837 0.64 -0.7 37,755 + Ac3H11_1837 0.65 +0.4 37,755 + Ac3H11_1837 0.65 +0.1 37,756 - Ac3H11_1837 0.65 +0.1 37,756 - Ac3H11_1837 0.65 -1.6 37,923 - Ac3H11_1837 0.83 -0.6 38,102 - +1.3 38,784 + Ac3H11_1839 0.24 +0.6
Or see this region's nucleotide sequence