Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00905 and AO353_00910 are separated by 270 nucleotides AO353_00910 and AO353_00915 are separated by 5 nucleotides AO353_00915 and AO353_00920 overlap by 1 nucleotides
AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961
_00905
AO353_00910: AO353_00910 - ATP-dependent zinc protease, at 207,232 to 207,771
_00910
AO353_00915: AO353_00915 - hypothetical protein, at 207,777 to 209,309
_00915
AO353_00920: AO353_00920 - alpha-L-glutamate ligase, at 209,309 to 210,295
_00920
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2 at 206.814 kb on - strand, within AO353_00905 at 207.054 kb on + strand at 207.067 kb on + strand at 207.067 kb on + strand at 207.068 kb on - strand at 207.068 kb on - strand at 207.075 kb on - strand at 207.078 kb on + strand at 207.079 kb on - strand at 207.079 kb on - strand at 207.106 kb on - strand at 207.106 kb on - strand at 207.119 kb on + strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.153 kb on - strand at 207.164 kb on + strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.266 kb on + strand at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.314 kb on - strand, within AO353_00910 at 207.328 kb on + strand, within AO353_00910 at 207.328 kb on + strand, within AO353_00910 at 207.411 kb on + strand, within AO353_00910 at 207.455 kb on - strand, within AO353_00910 at 207.562 kb on + strand, within AO353_00910 at 207.562 kb on + strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.591 kb on + strand, within AO353_00910 at 207.592 kb on - strand, within AO353_00910 at 207.620 kb on + strand, within AO353_00910 at 207.620 kb on + strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.718 kb on - strand at 207.718 kb on - strand at 207.718 kb on - strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.770 kb on - strand at 207.770 kb on - strand at 207.817 kb on + strand at 207.849 kb on + strand at 207.990 kb on + strand, within AO353_00915 at 207.991 kb on - strand, within AO353_00915 at 207.991 kb on - strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.108 kb on - strand, within AO353_00915 at 208.108 kb on - strand, within AO353_00915 at 208.134 kb on + strand, within AO353_00915 at 208.134 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.485 kb on + strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.677 kb on + strand, within AO353_00915 at 208.687 kb on - strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.857 kb on - strand, within AO353_00915 at 208.866 kb on - strand, within AO353_00915 at 208.902 kb on + strand, within AO353_00915 at 208.902 kb on + strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.997 kb on + strand, within AO353_00915 at 208.998 kb on - strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.181 kb on + strand at 209.181 kb on + strand at 209.307 kb on + strand at 209.308 kb on - strand at 209.384 kb on + strand at 209.384 kb on + strand at 209.384 kb on + strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.396 kb on + strand at 209.396 kb on + strand at 209.396 kb on + strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.486 kb on + strand, within AO353_00920 at 209.545 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.700 kb on - strand, within AO353_00920 at 209.777 kb on + strand, within AO353_00920 at 209.777 kb on + strand, within AO353_00920 at 209.778 kb on - strand, within AO353_00920 at 209.778 kb on - strand, within AO353_00920 at 209.986 kb on - strand, within AO353_00920 at 209.986 kb on - strand, within AO353_00920 at 210.005 kb on + strand, within AO353_00920 at 210.005 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.042 kb on - strand, within AO353_00920 at 210.042 kb on - strand, within AO353_00920 at 210.063 kb on - strand, within AO353_00920 at 210.063 kb on - strand, within AO353_00920 at 210.294 kb on - strand at 210.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 206,814 - AO353_00905 0.80 -1.7 207,054 + -0.7 207,067 + -1.1 207,067 + -0.2 207,068 - +0.3 207,068 - +0.6 207,075 - +0.5 207,078 + -0.3 207,079 - -0.7 207,079 - -0.8 207,106 - +0.5 207,106 - -1.1 207,119 + -0.3 207,120 - -0.1 207,120 - +0.4 207,120 - +1.3 207,120 - +0.2 207,120 - +0.5 207,120 - -0.6 207,153 - -0.0 207,164 + +0.6 207,165 - +0.3 207,165 - -0.2 207,165 - -0.1 207,165 - +0.7 207,165 - +0.2 207,165 - -0.1 207,165 - +0.0 207,231 + +0.5 207,231 + -0.4 207,231 + -2.7 207,231 + -1.2 207,232 - +1.0 207,232 - +0.2 207,232 - -1.0 207,232 - +0.7 207,232 - +0.8 207,232 - -0.6 207,266 + -0.4 207,313 + AO353_00910 0.15 +1.0 207,313 + AO353_00910 0.15 +0.5 207,313 + AO353_00910 0.15 +0.9 207,313 + AO353_00910 0.15 +0.2 207,313 + AO353_00910 0.15 -0.3 207,314 - AO353_00910 0.15 +1.2 207,328 + AO353_00910 0.18 -0.4 207,328 + AO353_00910 0.18 +0.9 207,411 + AO353_00910 0.33 +0.4 207,455 - AO353_00910 0.41 +0.4 207,562 + AO353_00910 0.61 -0.1 207,562 + AO353_00910 0.61 -0.6 207,563 - AO353_00910 0.61 +0.5 207,563 - AO353_00910 0.61 -0.4 207,563 - AO353_00910 0.61 -0.2 207,563 - AO353_00910 0.61 +0.5 207,563 - AO353_00910 0.61 +1.6 207,563 - AO353_00910 0.61 +0.2 207,591 + AO353_00910 0.66 +1.4 207,592 - AO353_00910 0.67 +0.6 207,620 + AO353_00910 0.72 +0.5 207,620 + AO353_00910 0.72 -1.8 207,621 - AO353_00910 0.72 -0.6 207,621 - AO353_00910 0.72 -0.2 207,621 - AO353_00910 0.72 +1.2 207,621 - AO353_00910 0.72 +0.1 207,621 - AO353_00910 0.72 -0.5 207,621 - AO353_00910 0.72 -0.5 207,621 - AO353_00910 0.72 +0.6 207,621 - AO353_00910 0.72 +0.1 207,621 - AO353_00910 0.72 +1.1 207,621 - AO353_00910 0.72 +0.2 207,621 - AO353_00910 0.72 -0.7 207,621 - AO353_00910 0.72 +1.1 207,717 + AO353_00910 0.90 -0.9 207,717 + AO353_00910 0.90 +0.4 207,717 + AO353_00910 0.90 -0.5 207,717 + AO353_00910 0.90 -1.4 207,717 + AO353_00910 0.90 +1.3 207,717 + AO353_00910 0.90 -0.4 207,717 + AO353_00910 0.90 +0.7 207,717 + AO353_00910 0.90 +0.7 207,718 - -0.2 207,718 - +0.3 207,718 - +0.1 207,721 + -0.9 207,721 + +0.0 207,721 + +0.8 207,721 + +1.2 207,721 + +0.2 207,721 + +1.2 207,722 - +1.0 207,722 - +1.2 207,722 - +0.4 207,722 - +0.6 207,769 + +0.7 207,769 + -1.2 207,769 + +0.9 207,769 + -0.6 207,769 + +0.1 207,769 + +0.8 207,770 - +0.5 207,770 - -0.6 207,817 + +1.6 207,849 + +0.1 207,990 + AO353_00915 0.14 -0.2 207,991 - AO353_00915 0.14 -0.1 207,991 - AO353_00915 0.14 +1.2 208,013 + AO353_00915 0.15 -1.0 208,013 + AO353_00915 0.15 -0.6 208,013 + AO353_00915 0.15 +1.2 208,014 - AO353_00915 0.15 +0.5 208,014 - AO353_00915 0.15 +1.8 208,014 - AO353_00915 0.15 -0.7 208,026 + AO353_00915 0.16 +0.2 208,026 + AO353_00915 0.16 -0.4 208,026 + AO353_00915 0.16 +0.3 208,026 + AO353_00915 0.16 -0.1 208,026 + AO353_00915 0.16 +0.4 208,026 + AO353_00915 0.16 -0.9 208,027 - AO353_00915 0.16 -0.1 208,027 - AO353_00915 0.16 +0.8 208,027 - AO353_00915 0.16 -0.0 208,027 - AO353_00915 0.16 +0.4 208,027 - AO353_00915 0.16 +0.8 208,027 - AO353_00915 0.16 -0.1 208,027 - AO353_00915 0.16 +0.3 208,027 - AO353_00915 0.16 -0.8 208,027 - AO353_00915 0.16 +0.5 208,027 - AO353_00915 0.16 -0.2 208,027 - AO353_00915 0.16 +0.5 208,027 - AO353_00915 0.16 +0.9 208,027 - AO353_00915 0.16 +1.2 208,107 + AO353_00915 0.22 +1.0 208,107 + AO353_00915 0.22 -1.0 208,107 + AO353_00915 0.22 -0.6 208,107 + AO353_00915 0.22 -0.4 208,108 - AO353_00915 0.22 +0.6 208,108 - AO353_00915 0.22 +1.3 208,134 + AO353_00915 0.23 +1.3 208,134 + AO353_00915 0.23 +0.6 208,390 + AO353_00915 0.40 -0.5 208,390 + AO353_00915 0.40 -0.5 208,390 + AO353_00915 0.40 +0.4 208,391 - AO353_00915 0.40 -0.6 208,391 - AO353_00915 0.40 +0.1 208,391 - AO353_00915 0.40 +0.5 208,391 - AO353_00915 0.40 +1.5 208,461 - AO353_00915 0.45 +0.1 208,461 - AO353_00915 0.45 -0.4 208,485 + AO353_00915 0.46 -1.4 208,486 - AO353_00915 0.46 +0.6 208,486 - AO353_00915 0.46 +1.2 208,486 - AO353_00915 0.46 +1.2 208,486 - AO353_00915 0.46 +0.3 208,486 - AO353_00915 0.46 +0.9 208,655 + AO353_00915 0.57 +1.1 208,655 + AO353_00915 0.57 +2.0 208,677 + AO353_00915 0.59 +1.3 208,687 - AO353_00915 0.59 +0.7 208,856 + AO353_00915 0.70 +0.6 208,856 + AO353_00915 0.70 +0.8 208,856 + AO353_00915 0.70 -0.8 208,856 + AO353_00915 0.70 -0.8 208,857 - AO353_00915 0.70 +1.4 208,866 - AO353_00915 0.71 +0.7 208,902 + AO353_00915 0.73 +0.2 208,902 + AO353_00915 0.73 +0.5 208,903 - AO353_00915 0.73 +0.7 208,903 - AO353_00915 0.73 +0.7 208,903 - AO353_00915 0.73 +0.3 208,997 + AO353_00915 0.80 +2.2 208,998 - AO353_00915 0.80 -0.3 209,126 + AO353_00915 0.88 +0.8 209,126 + AO353_00915 0.88 +0.3 209,126 + AO353_00915 0.88 -1.3 209,181 + -0.4 209,181 + +0.2 209,307 + +0.1 209,308 - +1.4 209,384 + +0.5 209,384 + +0.4 209,384 + +1.6 209,385 - +1.2 209,385 - -0.6 209,385 - +0.6 209,385 - -1.2 209,385 - +2.1 209,385 - +0.4 209,388 + +0.4 209,388 + -1.1 209,388 + -0.6 209,388 + -1.1 209,388 + +0.4 209,388 + +0.2 209,388 + -0.5 209,388 + -0.4 209,388 + +1.8 209,389 - +0.7 209,389 - +0.1 209,389 - +0.4 209,389 - +0.6 209,389 - -0.6 209,389 - +1.5 209,389 - +1.0 209,389 - +0.8 209,396 + +0.3 209,396 + -0.2 209,396 + +0.0 209,397 - -0.2 209,397 - +0.5 209,397 - +0.2 209,397 - +0.5 209,486 + AO353_00920 0.18 -0.1 209,545 + AO353_00920 0.24 -0.6 209,699 + AO353_00920 0.40 +0.3 209,699 + AO353_00920 0.40 +1.8 209,699 + AO353_00920 0.40 -1.6 209,699 + AO353_00920 0.40 +0.8 209,700 - AO353_00920 0.40 -0.1 209,777 + AO353_00920 0.47 +0.3 209,777 + AO353_00920 0.47 -0.7 209,778 - AO353_00920 0.48 +0.2 209,778 - AO353_00920 0.48 +0.5 209,986 - AO353_00920 0.69 +0.9 209,986 - AO353_00920 0.69 +0.4 210,005 + AO353_00920 0.71 +0.4 210,005 + AO353_00920 0.71 -0.1 210,041 + AO353_00920 0.74 +0.0 210,041 + AO353_00920 0.74 -0.1 210,041 + AO353_00920 0.74 +1.2 210,041 + AO353_00920 0.74 +0.6 210,041 + AO353_00920 0.74 +0.2 210,041 + AO353_00920 0.74 +0.4 210,042 - AO353_00920 0.74 +0.8 210,042 - AO353_00920 0.74 +1.0 210,063 - AO353_00920 0.76 -0.2 210,063 - AO353_00920 0.76 +0.1 210,294 - -0.1 210,294 - -0.4
Or see this region's nucleotide sequence