Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00530

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00525 and AO353_00530 are separated by 213 nucleotidesAO353_00530 and AO353_00535 are separated by 118 nucleotides AO353_00525: AO353_00525 - ABC transporter ATP-binding protein, at 106,950 to 108,866 _00525 AO353_00530: AO353_00530 - lytic transglycosylase, at 109,080 to 111,008 _00530 AO353_00535: AO353_00535 - ABC transporter ATP-binding protein, at 111,127 to 112,917 _00535 Position (kb) 109 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 108.249 kb on - strand, within AO353_00525at 108.565 kb on + strand, within AO353_00525at 108.565 kb on + strand, within AO353_00525at 108.566 kb on - strand, within AO353_00525at 108.566 kb on - strand, within AO353_00525at 108.654 kb on + strand, within AO353_00525at 108.822 kb on - strandat 108.822 kb on - strandat 108.896 kb on + strandat 108.897 kb on - strandat 108.897 kb on - strandat 108.970 kb on + strandat 109.014 kb on + strandat 109.015 kb on - strandat 109.019 kb on + strandat 109.019 kb on + strandat 109.020 kb on - strandat 109.020 kb on - strandat 109.021 kb on + strandat 109.021 kb on + strandat 109.022 kb on - strandat 109.022 kb on - strandat 109.022 kb on - strandat 109.022 kb on - strandat 109.026 kb on - strandat 109.176 kb on + strandat 109.176 kb on + strandat 109.177 kb on - strandat 109.179 kb on + strandat 109.179 kb on + strandat 109.179 kb on + strandat 109.180 kb on - strandat 109.180 kb on - strandat 109.225 kb on - strandat 109.270 kb on - strandat 109.431 kb on + strand, within AO353_00530at 109.431 kb on + strand, within AO353_00530at 109.431 kb on + strand, within AO353_00530at 109.431 kb on + strand, within AO353_00530at 109.432 kb on - strand, within AO353_00530at 109.432 kb on - strand, within AO353_00530at 109.432 kb on - strand, within AO353_00530at 109.432 kb on - strand, within AO353_00530at 109.434 kb on + strand, within AO353_00530at 109.434 kb on + strand, within AO353_00530at 109.482 kb on + strand, within AO353_00530at 109.482 kb on + strand, within AO353_00530at 109.483 kb on - strand, within AO353_00530at 109.483 kb on - strand, within AO353_00530at 109.516 kb on - strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.717 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.867 kb on - strand, within AO353_00530at 109.977 kb on + strand, within AO353_00530at 109.978 kb on - strand, within AO353_00530at 109.978 kb on - strand, within AO353_00530at 109.978 kb on - strand, within AO353_00530at 109.978 kb on - strand, within AO353_00530at 109.978 kb on - strand, within AO353_00530at 110.058 kb on + strand, within AO353_00530at 110.096 kb on + strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.173 kb on - strand, within AO353_00530at 110.202 kb on + strand, within AO353_00530at 110.202 kb on + strand, within AO353_00530at 110.203 kb on - strand, within AO353_00530at 110.286 kb on - strand, within AO353_00530at 110.297 kb on + strand, within AO353_00530at 110.298 kb on - strand, within AO353_00530at 110.298 kb on - strand, within AO353_00530at 110.298 kb on - strand, within AO353_00530at 110.307 kb on - strand, within AO353_00530at 110.308 kb on + strand, within AO353_00530at 110.308 kb on + strand, within AO353_00530at 110.308 kb on + strand, within AO353_00530at 110.308 kb on + strand, within AO353_00530at 110.308 kb on + strand, within AO353_00530at 110.308 kb on + strand, within AO353_00530at 110.308 kb on + strand, within AO353_00530at 110.309 kb on - strand, within AO353_00530at 110.309 kb on - strand, within AO353_00530at 110.309 kb on - strand, within AO353_00530at 110.309 kb on - strand, within AO353_00530at 110.309 kb on - strand, within AO353_00530at 110.309 kb on - strand, within AO353_00530at 110.309 kb on - strand, within AO353_00530at 110.368 kb on - strand, within AO353_00530at 110.368 kb on - strand, within AO353_00530at 110.388 kb on - strand, within AO353_00530at 110.388 kb on - strand, within AO353_00530at 110.425 kb on - strand, within AO353_00530at 110.425 kb on - strand, within AO353_00530at 110.439 kb on + strand, within AO353_00530at 110.439 kb on + strand, within AO353_00530at 110.439 kb on + strand, within AO353_00530at 110.440 kb on - strand, within AO353_00530at 110.440 kb on - strand, within AO353_00530at 110.475 kb on + strand, within AO353_00530at 110.476 kb on - strand, within AO353_00530at 110.527 kb on + strand, within AO353_00530at 110.527 kb on + strand, within AO353_00530at 110.528 kb on - strand, within AO353_00530at 110.528 kb on - strand, within AO353_00530at 110.528 kb on - strand, within AO353_00530at 110.528 kb on - strand, within AO353_00530at 110.749 kb on - strand, within AO353_00530at 110.805 kb on + strand, within AO353_00530at 110.805 kb on + strand, within AO353_00530at 110.806 kb on - strand, within AO353_00530at 110.907 kb on + strandat 110.911 kb on + strandat 110.911 kb on + strandat 110.911 kb on + strandat 110.928 kb on + strandat 110.929 kb on - strandat 110.929 kb on - strandat 110.941 kb on - strandat 110.992 kb on - strandat 110.992 kb on - strandat 111.007 kb on - strandat 111.007 kb on - strandat 111.007 kb on - strandat 111.007 kb on - strandat 111.055 kb on + strandat 111.056 kb on - strandat 111.116 kb on + strandat 111.116 kb on + strandat 111.116 kb on + strandat 111.116 kb on + strandat 111.116 kb on + strandat 111.116 kb on + strandat 111.116 kb on + strandat 111.117 kb on - strandat 111.117 kb on - strandat 111.117 kb on - strandat 111.128 kb on + strandat 111.172 kb on + strandat 111.200 kb on + strandat 111.201 kb on - strandat 111.201 kb on - strandat 111.235 kb on - strandat 111.235 kb on - strandat 111.244 kb on + strandat 111.675 kb on + strand, within AO353_00535at 111.734 kb on + strand, within AO353_00535at 111.734 kb on + strand, within AO353_00535at 111.734 kb on + strand, within AO353_00535at 111.735 kb on - strand, within AO353_00535at 111.735 kb on - strand, within AO353_00535at 111.755 kb on + strand, within AO353_00535at 111.756 kb on - strand, within AO353_00535at 111.756 kb on - strand, within AO353_00535at 111.842 kb on + strand, within AO353_00535at 111.842 kb on + strand, within AO353_00535at 111.842 kb on + strand, within AO353_00535at 111.842 kb on + strand, within AO353_00535at 111.842 kb on + strand, within AO353_00535at 111.843 kb on - strand, within AO353_00535at 111.843 kb on - strand, within AO353_00535at 111.843 kb on - strand, within AO353_00535at 111.864 kb on - strand, within AO353_00535at 111.874 kb on + strand, within AO353_00535at 111.875 kb on - strand, within AO353_00535

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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108,249 - AO353_00525 0.68 +1.6
108,565 + AO353_00525 0.84 -0.3
108,565 + AO353_00525 0.84 -1.3
108,566 - AO353_00525 0.84 -0.2
108,566 - AO353_00525 0.84 +0.1
108,654 + AO353_00525 0.89 +2.1
108,822 - -0.8
108,822 - +0.9
108,896 + -0.8
108,897 - -0.8
108,897 - +1.4
108,970 + +1.0
109,014 + -1.0
109,015 - +1.1
109,019 + -0.7
109,019 + -0.7
109,020 - +0.3
109,020 - -0.2
109,021 + -1.1
109,021 + +0.4
109,022 - +0.6
109,022 - -0.6
109,022 - -0.4
109,022 - +0.6
109,026 - +1.3
109,176 + +1.0
109,176 + +0.4
109,177 - -1.8
109,179 + -0.2
109,179 + -0.6
109,179 + +1.1
109,180 - +0.6
109,180 - +0.9
109,225 - +0.7
109,270 - -1.4
109,431 + AO353_00530 0.18 -0.3
109,431 + AO353_00530 0.18 +1.1
109,431 + AO353_00530 0.18 +1.1
109,431 + AO353_00530 0.18 +0.5
109,432 - AO353_00530 0.18 -1.4
109,432 - AO353_00530 0.18 +2.3
109,432 - AO353_00530 0.18 +0.1
109,432 - AO353_00530 0.18 +1.4
109,434 + AO353_00530 0.18 +0.3
109,434 + AO353_00530 0.18 -0.4
109,482 + AO353_00530 0.21 +1.1
109,482 + AO353_00530 0.21 +1.3
109,483 - AO353_00530 0.21 +0.1
109,483 - AO353_00530 0.21 +0.6
109,516 - AO353_00530 0.23 +0.1
109,659 + AO353_00530 0.30 -0.0
109,659 + AO353_00530 0.30 -0.0
109,659 + AO353_00530 0.30 -0.8
109,659 + AO353_00530 0.30 +0.4
109,659 + AO353_00530 0.30 -0.7
109,659 + AO353_00530 0.30 +1.2
109,659 + AO353_00530 0.30 -0.0
109,659 + AO353_00530 0.30 +0.6
109,659 + AO353_00530 0.30 +1.3
109,660 - AO353_00530 0.30 -1.9
109,660 - AO353_00530 0.30 +0.2
109,660 - AO353_00530 0.30 +1.1
109,660 - AO353_00530 0.30 +1.1
109,660 - AO353_00530 0.30 -0.0
109,660 - AO353_00530 0.30 +0.4
109,660 - AO353_00530 0.30 +0.1
109,717 + AO353_00530 0.33 +0.6
109,866 + AO353_00530 0.41 -0.1
109,866 + AO353_00530 0.41 +0.2
109,866 + AO353_00530 0.41 +1.7
109,866 + AO353_00530 0.41 +1.4
109,866 + AO353_00530 0.41 +1.5
109,866 + AO353_00530 0.41 +0.3
109,866 + AO353_00530 0.41 +1.1
109,866 + AO353_00530 0.41 +0.4
109,866 + AO353_00530 0.41 +0.2
109,867 - AO353_00530 0.41 -0.5
109,867 - AO353_00530 0.41 -0.4
109,867 - AO353_00530 0.41 +0.4
109,867 - AO353_00530 0.41 +0.6
109,867 - AO353_00530 0.41 +1.7
109,867 - AO353_00530 0.41 +1.0
109,867 - AO353_00530 0.41 +0.5
109,867 - AO353_00530 0.41 +0.1
109,867 - AO353_00530 0.41 +1.1
109,867 - AO353_00530 0.41 +1.1
109,867 - AO353_00530 0.41 -0.6
109,867 - AO353_00530 0.41 -0.0
109,977 + AO353_00530 0.47 +1.9
109,978 - AO353_00530 0.47 +0.1
109,978 - AO353_00530 0.47 -0.0
109,978 - AO353_00530 0.47 +1.0
109,978 - AO353_00530 0.47 +0.0
109,978 - AO353_00530 0.47 +0.6
110,058 + AO353_00530 0.51 +2.1
110,096 + AO353_00530 0.53 +0.1
110,173 - AO353_00530 0.57 +0.1
110,173 - AO353_00530 0.57 +0.4
110,173 - AO353_00530 0.57 +0.1
110,173 - AO353_00530 0.57 +0.9
110,173 - AO353_00530 0.57 -0.1
110,173 - AO353_00530 0.57 +0.5
110,173 - AO353_00530 0.57 +0.7
110,173 - AO353_00530 0.57 +1.1
110,173 - AO353_00530 0.57 -2.0
110,202 + AO353_00530 0.58 +1.7
110,202 + AO353_00530 0.58 +0.5
110,203 - AO353_00530 0.58 +0.3
110,286 - AO353_00530 0.63 +0.9
110,297 + AO353_00530 0.63 -1.0
110,298 - AO353_00530 0.63 +1.1
110,298 - AO353_00530 0.63 +0.6
110,298 - AO353_00530 0.63 +1.3
110,307 - AO353_00530 0.64 +0.8
110,308 + AO353_00530 0.64 -0.3
110,308 + AO353_00530 0.64 +2.0
110,308 + AO353_00530 0.64 +1.0
110,308 + AO353_00530 0.64 +0.4
110,308 + AO353_00530 0.64 -1.4
110,308 + AO353_00530 0.64 +0.5
110,308 + AO353_00530 0.64 +0.4
110,309 - AO353_00530 0.64 +0.7
110,309 - AO353_00530 0.64 -1.1
110,309 - AO353_00530 0.64 -0.0
110,309 - AO353_00530 0.64 +1.5
110,309 - AO353_00530 0.64 +0.8
110,309 - AO353_00530 0.64 +2.3
110,309 - AO353_00530 0.64 +2.3
110,368 - AO353_00530 0.67 +1.7
110,368 - AO353_00530 0.67 +0.5
110,388 - AO353_00530 0.68 +1.2
110,388 - AO353_00530 0.68 -1.6
110,425 - AO353_00530 0.70 -0.1
110,425 - AO353_00530 0.70 +0.3
110,439 + AO353_00530 0.70 +0.4
110,439 + AO353_00530 0.70 +1.0
110,439 + AO353_00530 0.70 +2.2
110,440 - AO353_00530 0.71 +0.7
110,440 - AO353_00530 0.71 +0.7
110,475 + AO353_00530 0.72 +1.6
110,476 - AO353_00530 0.72 +0.2
110,527 + AO353_00530 0.75 +1.0
110,527 + AO353_00530 0.75 -0.2
110,528 - AO353_00530 0.75 +0.1
110,528 - AO353_00530 0.75 +0.5
110,528 - AO353_00530 0.75 +0.1
110,528 - AO353_00530 0.75 +1.8
110,749 - AO353_00530 0.87 +0.7
110,805 + AO353_00530 0.89 +0.7
110,805 + AO353_00530 0.89 +0.2
110,806 - AO353_00530 0.89 +1.1
110,907 + +1.7
110,911 + -0.7
110,911 + +2.7
110,911 + +1.4
110,928 + +0.3
110,929 - +1.1
110,929 - -2.0
110,941 - +0.7
110,992 - +0.5
110,992 - +0.2
111,007 - +0.6
111,007 - +0.1
111,007 - +0.5
111,007 - -0.4
111,055 + -0.9
111,056 - +0.4
111,116 + +0.3
111,116 + +0.1
111,116 + +0.1
111,116 + -0.5
111,116 + +0.1
111,116 + +0.4
111,116 + +0.2
111,117 - +0.1
111,117 - +0.4
111,117 - +0.9
111,128 + -1.0
111,172 + -0.7
111,200 + +0.4
111,201 - +0.2
111,201 - -1.8
111,235 - -0.8
111,235 - +0.7
111,244 + +0.5
111,675 + AO353_00535 0.31 +0.4
111,734 + AO353_00535 0.34 -0.0
111,734 + AO353_00535 0.34 +0.3
111,734 + AO353_00535 0.34 -0.2
111,735 - AO353_00535 0.34 -0.2
111,735 - AO353_00535 0.34 +0.8
111,755 + AO353_00535 0.35 -1.1
111,756 - AO353_00535 0.35 +0.4
111,756 - AO353_00535 0.35 -1.4
111,842 + AO353_00535 0.40 -1.3
111,842 + AO353_00535 0.40 -0.7
111,842 + AO353_00535 0.40 +1.7
111,842 + AO353_00535 0.40 -0.1
111,842 + AO353_00535 0.40 +0.1
111,843 - AO353_00535 0.40 -0.4
111,843 - AO353_00535 0.40 -0.5
111,843 - AO353_00535 0.40 +0.4
111,864 - AO353_00535 0.41 +1.5
111,874 + AO353_00535 0.42 +2.1
111,875 - AO353_00535 0.42 -0.3

Or see this region's nucleotide sequence