Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000450

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000448 and ABIE53_000449 are separated by 10 nucleotidesABIE53_000449 and ABIE53_000450 overlap by 2 nucleotidesABIE53_000450 and ABIE53_000451 are separated by 258 nucleotides ABIE53_000448: ABIE53_000448 - two-component system invasion response regulator UvrY, at 484,571 to 485,227 _000448 ABIE53_000449: ABIE53_000449 - signal transduction histidine kinase, at 485,238 to 486,134 _000449 ABIE53_000450: ABIE53_000450 - hypothetical protein, at 486,133 to 486,294 _000450 ABIE53_000451: ABIE53_000451 - ferredoxin--NADP+ reductase, at 486,553 to 487,323 _000451 Position (kb) 486 487Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 485.340 kb on - strand, within ABIE53_000449at 485.591 kb on + strand, within ABIE53_000449at 486.128 kb on + strandat 486.128 kb on + strandat 486.128 kb on + strandat 486.128 kb on + strandat 486.128 kb on + strandat 486.128 kb on + strandat 486.128 kb on + strandat 486.128 kb on + strandat 486.128 kb on + strandat 486.129 kb on - strandat 486.129 kb on - strandat 486.129 kb on - strandat 486.129 kb on - strandat 486.129 kb on - strandat 486.129 kb on - strandat 486.129 kb on - strandat 486.129 kb on - strandat 486.129 kb on - strandat 486.225 kb on + strand, within ABIE53_000450at 486.226 kb on - strand, within ABIE53_000450at 486.226 kb on - strand, within ABIE53_000450at 486.226 kb on - strand, within ABIE53_000450at 486.226 kb on - strand, within ABIE53_000450at 486.226 kb on - strand, within ABIE53_000450at 486.244 kb on + strand, within ABIE53_000450at 486.244 kb on + strand, within ABIE53_000450at 486.244 kb on + strand, within ABIE53_000450at 486.245 kb on - strand, within ABIE53_000450at 486.245 kb on - strand, within ABIE53_000450at 486.245 kb on - strand, within ABIE53_000450at 486.245 kb on - strand, within ABIE53_000450at 486.261 kb on + strand, within ABIE53_000450at 486.262 kb on - strand, within ABIE53_000450at 486.262 kb on - strand, within ABIE53_000450at 486.262 kb on - strand, within ABIE53_000450at 486.273 kb on + strand, within ABIE53_000450at 486.274 kb on - strand, within ABIE53_000450at 486.351 kb on - strandat 486.398 kb on - strandat 486.398 kb on - strandat 486.398 kb on - strandat 486.406 kb on + strandat 486.407 kb on - strandat 486.437 kb on + strandat 486.438 kb on - strandat 486.438 kb on - strandat 486.438 kb on - strandat 486.438 kb on - strandat 486.483 kb on + strandat 486.483 kb on + strandat 486.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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485,340 - ABIE53_000449 0.11 +0.7
485,591 + ABIE53_000449 0.39 +1.3
486,128 + -0.1
486,128 + +1.2
486,128 + +0.5
486,128 + +2.0
486,128 + -0.3
486,128 + +1.1
486,128 + +1.4
486,128 + +1.0
486,128 + +1.4
486,129 - +3.8
486,129 - +1.6
486,129 - +0.1
486,129 - +0.6
486,129 - +0.7
486,129 - +1.0
486,129 - +3.6
486,129 - -0.0
486,129 - +2.3
486,225 + ABIE53_000450 0.57 +0.6
486,226 - ABIE53_000450 0.57 -1.1
486,226 - ABIE53_000450 0.57 -0.5
486,226 - ABIE53_000450 0.57 -0.1
486,226 - ABIE53_000450 0.57 -0.1
486,226 - ABIE53_000450 0.57 -0.7
486,244 + ABIE53_000450 0.69 +1.0
486,244 + ABIE53_000450 0.69 +1.1
486,244 + ABIE53_000450 0.69 +2.8
486,245 - ABIE53_000450 0.69 +2.5
486,245 - ABIE53_000450 0.69 -0.1
486,245 - ABIE53_000450 0.69 -1.1
486,245 - ABIE53_000450 0.69 -0.1
486,261 + ABIE53_000450 0.79 +0.9
486,262 - ABIE53_000450 0.80 -0.9
486,262 - ABIE53_000450 0.80 -0.7
486,262 - ABIE53_000450 0.80 +2.3
486,273 + ABIE53_000450 0.86 +1.3
486,274 - ABIE53_000450 0.87 -1.1
486,351 - -0.4
486,398 - +0.7
486,398 - +2.3
486,398 - -0.1
486,406 + +0.1
486,407 - -1.1
486,437 + +0.3
486,438 - +0.5
486,438 - -0.5
486,438 - -0.3
486,438 - +0.3
486,483 + -0.1
486,483 + -2.2
486,484 - +0.3

Or see this region's nucleotide sequence