Strain Fitness in Pantoea sp. MT58 around IAI47_18180

Experiment: copper (II) chloride 5 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_18170 and IAI47_18175 are separated by 42 nucleotidesIAI47_18175 and IAI47_18180 overlap by 4 nucleotidesIAI47_18180 and IAI47_18185 are separated by 150 nucleotidesIAI47_18185 and IAI47_18190 are separated by 75 nucleotides IAI47_18170: IAI47_18170 - type I pantothenate kinase, at 3,865,832 to 3,866,779 _18170 IAI47_18175: IAI47_18175 - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 3,866,822 to 3,867,781 _18175 IAI47_18180: IAI47_18180 - UDP-N-acetylmuramate dehydrogenase, at 3,867,778 to 3,868,815 _18180 IAI47_18185: IAI47_18185 - 5S ribosomal RNA, at 3,868,966 to 3,869,081 _18185 IAI47_18190: IAI47_18190 - 23S ribosomal RNA, at 3,869,157 to 3,872,091 _18190 Position (kb) 3867 3868 3869Strain fitness (log2 ratio) -2 -1 0 1 2at 3866.778 kb on - strandat 3866.778 kb on - strandat 3866.789 kb on + strandat 3866.790 kb on - strandat 3866.804 kb on + strandat 3866.804 kb on + strandat 3866.804 kb on + strandat 3866.804 kb on + strandat 3866.805 kb on - strandat 3866.805 kb on - strandat 3866.805 kb on - strandat 3866.805 kb on - strandat 3866.834 kb on + strandat 3866.835 kb on - strandat 3866.835 kb on - strandat 3866.835 kb on - strandat 3866.835 kb on - strandat 3866.835 kb on - strandat 3866.835 kb on - strandat 3868.836 kb on - strandat 3868.836 kb on - strandat 3868.836 kb on - strandat 3868.836 kb on - strandat 3868.846 kb on - strandat 3868.851 kb on - strandat 3868.855 kb on + strandat 3868.856 kb on - strandat 3868.856 kb on - strandat 3868.890 kb on + strandat 3868.890 kb on + strandat 3868.890 kb on + strandat 3868.890 kb on + strandat 3868.890 kb on + strandat 3868.890 kb on + strandat 3868.890 kb on + strandat 3868.890 kb on + strandat 3868.890 kb on + strandat 3868.891 kb on - strandat 3868.891 kb on - strandat 3868.891 kb on - strandat 3868.891 kb on - strandat 3868.891 kb on - strandat 3868.891 kb on - strandat 3868.891 kb on - strandat 3868.891 kb on - strandat 3868.921 kb on - strandat 3869.125 kb on - strandat 3869.125 kb on - strandat 3869.125 kb on - strandat 3869.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 5 uM, aerobic
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3,866,778 - -0.3
3,866,778 - +2.3
3,866,789 + +0.7
3,866,790 - +0.3
3,866,804 + +0.5
3,866,804 + +1.5
3,866,804 + +0.3
3,866,804 + -1.8
3,866,805 - +1.1
3,866,805 - +0.6
3,866,805 - -0.6
3,866,805 - -1.2
3,866,834 + +0.5
3,866,835 - +0.6
3,866,835 - -0.2
3,866,835 - +0.5
3,866,835 - -0.0
3,866,835 - +0.5
3,866,835 - -0.5
3,868,836 - +0.8
3,868,836 - -0.0
3,868,836 - +0.8
3,868,836 - -1.5
3,868,846 - +0.3
3,868,851 - -0.6
3,868,855 + -2.2
3,868,856 - +0.0
3,868,856 - +1.4
3,868,890 + -0.5
3,868,890 + -0.7
3,868,890 + -0.5
3,868,890 + -1.2
3,868,890 + +0.5
3,868,890 + +1.4
3,868,890 + +0.7
3,868,890 + -0.5
3,868,890 + +0.9
3,868,891 - +0.8
3,868,891 - +0.3
3,868,891 - +0.6
3,868,891 - -0.2
3,868,891 - -0.2
3,868,891 - -2.2
3,868,891 - -0.5
3,868,891 - +0.5
3,868,921 - -0.7
3,869,125 - -0.2
3,869,125 - +0.6
3,869,125 - -1.1
3,869,125 - -0.5

Or see this region's nucleotide sequence