Strain Fitness in Pantoea sp. MT58 around IAI47_15960

Experiment: copper (II) chloride 5 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_15955 and IAI47_15960 overlap by 14 nucleotidesIAI47_15960 and IAI47_15965 are separated by 16 nucleotidesIAI47_15965 and IAI47_15970 overlap by 4 nucleotides IAI47_15955: IAI47_15955 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 3,368,817 to 3,370,304 _15955 IAI47_15960: IAI47_15960 - peptidoglycan glycosyltransferase FtsI, at 3,370,291 to 3,372,057 _15960 IAI47_15965: IAI47_15965 - cell division protein FtsL, at 3,372,074 to 3,372,394 _15965 IAI47_15970: IAI47_15970 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 3,372,391 to 3,373,332 _15970 Position (kb) 3370 3371 3372 3373Strain fitness (log2 ratio) -1 0 1at 3372.076 kb on - strandat 3372.076 kb on - strandat 3372.076 kb on - strandat 3372.076 kb on - strandat 3372.586 kb on - strand, within IAI47_15970at 3372.647 kb on - strand, within IAI47_15970at 3372.697 kb on - strand, within IAI47_15970at 3372.844 kb on - strand, within IAI47_15970at 3372.844 kb on - strand, within IAI47_15970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 5 uM, aerobic
remove
3,372,076 - +0.7
3,372,076 - -0.3
3,372,076 - -0.3
3,372,076 - -1.2
3,372,586 - IAI47_15970 0.21 +0.3
3,372,647 - IAI47_15970 0.27 -1.1
3,372,697 - IAI47_15970 0.32 +0.4
3,372,844 - IAI47_15970 0.48 -0.7
3,372,844 - IAI47_15970 0.48 -0.3

Or see this region's nucleotide sequence