Strain Fitness in Pantoea sp. MT58 around IAI47_15945

Experiment: copper (II) chloride 5 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_15940 and IAI47_15945 are separated by 2 nucleotidesIAI47_15945 and IAI47_15950 overlap by 7 nucleotides IAI47_15940: IAI47_15940 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 3,365,067 to 3,366,383 _15940 IAI47_15945: IAI47_15945 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 3,366,386 to 3,367,468 _15945 IAI47_15950: IAI47_15950 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 3,367,462 to 3,368,820 _15950 Position (kb) 3366 3367 3368Strain fitness (log2 ratio) -2 -1 0 1 2at 3367.484 kb on - strandat 3367.484 kb on - strandat 3367.484 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 5 uM, aerobic
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3,367,484 - -0.5
3,367,484 - -1.1
3,367,484 - -1.1
3,367,493 - +0.6
3,367,493 - +0.8
3,367,493 - +0.9
3,367,493 - -0.5
3,367,493 - +0.1
3,367,493 - -2.4
3,367,493 - +0.5
3,367,493 - +1.8
3,367,496 - +0.0

Or see this region's nucleotide sequence