Strain Fitness in Pantoea sp. MT58 around IAI47_15930

Experiment: copper (II) chloride 5 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_15925 and IAI47_15930 are separated by 70 nucleotidesIAI47_15930 and IAI47_15935 overlap by 4 nucleotides IAI47_15925: IAI47_15925 - UDP-N-acetylmuramate--L-alanine ligase, at 3,361,249 to 3,362,727 _15925 IAI47_15930: IAI47_15930 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 3,362,798 to 3,363,856 _15930 IAI47_15935: IAI47_15935 - cell division protein FtsW, at 3,363,853 to 3,365,067 _15935 Position (kb) 3362 3363 3364Strain fitness (log2 ratio) -2 -1 0 1at 3362.739 kb on - strandat 3362.739 kb on - strandat 3362.746 kb on - strandat 3362.746 kb on - strandat 3362.800 kb on - strandat 3362.800 kb on - strandat 3362.800 kb on - strandat 3363.871 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 5 uM, aerobic
remove
3,362,739 - -0.3
3,362,739 - -2.0
3,362,746 - +1.0
3,362,746 - -0.3
3,362,800 - -0.3
3,362,800 - +0.7
3,362,800 - -0.0
3,363,871 - -0.6

Or see this region's nucleotide sequence