Strain Fitness in Pantoea sp. MT58 around IAI47_11995

Experiment: copper (II) chloride 5 uM, aerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 5 uM, aerobic
2,540,488	+		IAI47_11985	0.84	-0.7
2,540,488	+		IAI47_11985	0.84	-1.0
2,540,489	-		IAI47_11985	0.85	+0.9
2,540,489	-		IAI47_11985	0.85	-3.2
2,540,489	-		IAI47_11985	0.85	+0.2
2,540,562	-				-0.4
2,540,562	-				+0.3
2,540,568	-				+0.3
2,540,582	+				-1.4
2,540,600	+				-2.1
2,540,601	-				+0.6
2,540,663	+				+1.1
2,540,664	-				+0.7
2,540,676	-				-0.0
2,540,684	+				-0.3
2,540,684	+				+0.5
2,540,684	+				+0.7
2,540,684	+				-1.3
2,540,685	-				+0.9
2,540,685	-				+0.6
2,540,685	-				+0.6
2,540,685	-				-1.5
2,540,685	-				+0.0
2,540,685	-				-0.1
2,540,793	+				+1.3
2,540,793	+				-0.8
2,540,793	+				+0.9
2,540,793	+				-0.3
2,540,794	-				+0.3
2,540,794	-				-0.7
2,540,794	-				+0.4
2,540,818	-				-0.4
2,540,823	+				+1.1
2,540,830	-				+2.7
2,540,830	-				+0.9
2,540,830	-				-0.1
2,540,830	-				+1.0
2,540,831	+				+0.3
2,540,831	+				-0.1
2,540,832	-				-1.9
2,540,832	-				+0.3
2,540,832	-				-0.8
2,540,849	+				-1.0
2,540,850	-				-0.2
2,540,861	-				-0.1
2,540,864	+				-0.2
2,540,864	+				-0.5
2,540,864	+				-0.4
2,540,865	-				+0.4
2,540,865	-				-0.7
2,540,865	-				+0.6
2,540,949	-				+0.3
2,540,949	-				+0.1
2,540,949	-				-0.0
2,540,994	+		IAI47_11990	0.17	+1.1
2,541,123	+		IAI47_11990	0.41	-1.1
2,541,124	-		IAI47_11990	0.41	-0.2
2,541,124	-		IAI47_11990	0.41	-0.1
2,541,154	+		IAI47_11990	0.46	-0.4
2,541,154	+		IAI47_11990	0.46	+0.0
2,541,155	-		IAI47_11990	0.46	-0.2
2,541,155	-		IAI47_11990	0.46	+0.6
2,541,155	-		IAI47_11990	0.46	-0.5
2,541,292	+		IAI47_11990	0.72	+0.8
2,541,293	-		IAI47_11990	0.72	+0.4
2,541,319	+		IAI47_11990	0.77	+0.1
2,541,319	+		IAI47_11990	0.77	-0.5
2,541,319	+		IAI47_11990	0.77	-2.1
2,541,319	+		IAI47_11990	0.77	+0.1
2,541,320	-		IAI47_11990	0.77	+0.5
2,541,320	-		IAI47_11990	0.77	-0.3
2,541,320	-		IAI47_11990	0.77	+0.6
2,541,320	-		IAI47_11990	0.77	-1.3
2,541,320	-		IAI47_11990	0.77	-0.7
2,541,320	-		IAI47_11990	0.77	+0.1
2,541,328	+		IAI47_11990	0.78	+0.8
2,541,328	+		IAI47_11990	0.78	-1.4
2,541,328	+		IAI47_11990	0.78	+0.6
2,541,329	-		IAI47_11990	0.78	-2.1
2,541,329	-		IAI47_11990	0.78	-0.2
2,541,345	+		IAI47_11990	0.81	-0.3
2,541,345	+		IAI47_11990	0.81	-0.8
2,541,345	+		IAI47_11990	0.81	+0.8
2,541,346	-		IAI47_11990	0.82	+0.2
2,541,346	-		IAI47_11990	0.82	+0.2
2,541,346	-		IAI47_11990	0.82	+2.1
2,541,373	+		IAI47_11990	0.87	-0.4
2,541,374	-		IAI47_11990	0.87	-0.3
2,541,435	+				-0.2
2,541,435	+				-0.4
2,541,435	+				+1.1
2,541,435	+				-0.4
2,541,436	-				-0.3
2,541,436	-				+0.7
2,541,445	+				-0.5
2,541,445	+				+1.8
2,541,445	+				-0.7
2,541,445	+				+0.5
2,541,445	+				+0.5
2,541,446	-				-0.7
2,541,446	-				-0.4
2,541,446	-				-0.0
2,541,446	-				-0.9
2,541,446	-				-1.3
2,541,446	-				-0.9
2,541,446	-				-0.1
2,541,448	+				+0.5
2,541,448	+				+0.5
2,541,448	+				+0.1
2,541,449	-				+0.8
2,541,449	-				-0.1
2,541,449	-				-0.0
2,541,449	-				+0.2
2,541,466	+				+0.8
2,541,466	+				-0.6
2,541,466	+				-0.5
2,541,467	-				+0.5
2,541,467	-				-1.0
2,541,487	+				-1.1
2,541,488	-				+0.1
2,541,488	-				-0.2
2,541,563	+				-1.6
2,541,730	+		IAI47_11995	0.23	+0.8
2,541,731	-		IAI47_11995	0.24	-0.7
2,541,731	-		IAI47_11995	0.24	+0.1
2,541,731	-		IAI47_11995	0.24	+0.5
2,541,731	-		IAI47_11995	0.24	+0.4
2,541,731	-		IAI47_11995	0.24	+0.5
2,541,826	+		IAI47_11995	0.33	+0.6
2,541,865	+		IAI47_11995	0.36	-0.2
2,541,865	+		IAI47_11995	0.36	-0.7
2,541,866	-		IAI47_11995	0.37	-1.2
2,541,866	-		IAI47_11995	0.37	-2.0
2,541,866	-		IAI47_11995	0.37	-1.0
2,541,866	-		IAI47_11995	0.37	+2.0
2,541,984	-		IAI47_11995	0.48	-0.0
2,542,025	+		IAI47_11995	0.52	-0.3
2,542,026	-		IAI47_11995	0.52	-0.8
2,542,065	-		IAI47_11995	0.56	-0.6
2,542,136	+		IAI47_11995	0.62	+0.1
2,542,136	+		IAI47_11995	0.62	-0.2
2,542,136	+		IAI47_11995	0.62	-0.8
2,542,136	+		IAI47_11995	0.62	+0.3
2,542,286	+		IAI47_11995	0.77	-1.3
2,542,287	-		IAI47_11995	0.77	-0.8
2,542,480	+				+0.0
2,542,481	-				-1.6
2,542,527	-				+0.3
2,542,527	-				+0.9
2,542,546	+				-1.0
2,542,546	+				-2.2
2,542,547	-				-1.2
2,542,547	-				+1.4
2,542,559	-				-0.1
2,542,568	-				+0.3
2,542,568	-				+0.2
2,542,602	+				-0.4
2,542,603	-				+0.1
2,542,603	-				+1.1
2,542,603	-				+0.7
2,542,603	-				-1.3
2,542,603	-				+1.6
2,542,729	+		IAI47_12000	0.21	-0.5
2,542,729	+		IAI47_12000	0.21	-0.4
2,542,729	+		IAI47_12000	0.21	+1.4
2,542,729	+		IAI47_12000	0.21	+0.3
2,542,730	-		IAI47_12000	0.21	-0.9
2,542,730	-		IAI47_12000	0.21	-1.0
2,542,814	-		IAI47_12000	0.32	-1.0
2,542,851	+		IAI47_12000	0.36	-1.2
2,542,851	+		IAI47_12000	0.36	+0.5
2,542,851	+		IAI47_12000	0.36	-1.3
2,542,851	+		IAI47_12000	0.36	-2.0
2,542,851	+		IAI47_12000	0.36	+0.1
2,542,851	+		IAI47_12000	0.36	-0.6
2,542,852	-		IAI47_12000	0.37	+0.1
2,542,852	-		IAI47_12000	0.37	-0.2
2,542,852	-		IAI47_12000	0.37	-0.2
2,542,852	-		IAI47_12000	0.37	-0.6
2,542,852	-		IAI47_12000	0.37	-1.0
2,542,852	-		IAI47_12000	0.37	+0.1
2,542,852	-		IAI47_12000	0.37	+0.0
2,542,852	-		IAI47_12000	0.37	-0.9
2,542,852	-		IAI47_12000	0.37	-2.6
2,542,967	+		IAI47_12000	0.51	-0.4
2,542,967	+		IAI47_12000	0.51	+0.6
2,542,967	+		IAI47_12000	0.51	-1.2
2,542,967	+		IAI47_12000	0.51	+1.1
2,542,967	+		IAI47_12000	0.51	+0.5
2,542,968	-		IAI47_12000	0.51	+1.3
2,542,968	-		IAI47_12000	0.51	+0.0
2,542,978	+		IAI47_12000	0.53	-0.1
2,542,989	+		IAI47_12000	0.54	+0.6
2,542,990	-		IAI47_12000	0.54	+0.1
2,542,990	-		IAI47_12000	0.54	-0.8
2,543,121	-		IAI47_12000	0.71	-0.2
2,543,121	-		IAI47_12000	0.71	+0.4
2,543,142	+		IAI47_12000	0.74	+0.1
2,543,142	+		IAI47_12000	0.74	-1.8
2,543,220	-		IAI47_12000	0.84	-1.2
2,543,220	-		IAI47_12000	0.84	+1.0
2,543,247	-		IAI47_12000	0.87	-0.8
2,543,307	-				-0.3
2,543,307	-				+0.1
2,543,366	+				-0.0
2,543,366	+				-0.0
2,543,366	+				-0.3
2,543,367	-				-0.4
2,543,448	+		IAI47_12005	0.14	+0.1
2,543,449	-		IAI47_12005	0.14	+0.8
2,543,467	-		IAI47_12005	0.17	+0.1
2,543,471	+		IAI47_12005	0.18	+0.7
2,543,471	+		IAI47_12005	0.18	-1.5
2,543,472	-		IAI47_12005	0.18	+0.6
2,543,472	-		IAI47_12005	0.18	-0.8
2,543,472	-		IAI47_12005	0.18	+0.5
2,543,472	-		IAI47_12005	0.18	+0.4
2,543,472	-		IAI47_12005	0.18	+0.9
2,543,480	+		IAI47_12005	0.19	-1.7
2,543,480	+		IAI47_12005	0.19	+0.6
2,543,480	+		IAI47_12005	0.19	+0.2
2,543,480	+		IAI47_12005	0.19	-1.0
2,543,480	+		IAI47_12005	0.19	-0.5
2,543,480	+		IAI47_12005	0.19	+0.2
2,543,480	+		IAI47_12005	0.19	+0.7
2,543,481	-		IAI47_12005	0.19	-0.6
2,543,481	-		IAI47_12005	0.19	+1.1
2,543,481	-		IAI47_12005	0.19	-0.5
2,543,481	-		IAI47_12005	0.19	+1.2
2,543,481	-		IAI47_12005	0.19	+0.6
2,543,481	-		IAI47_12005	0.19	-0.2
2,543,481	-		IAI47_12005	0.19	-0.8
2,543,481	-		IAI47_12005	0.19	-0.5
2,543,481	-		IAI47_12005	0.19	+2.9
2,543,518	-		IAI47_12005	0.26	-1.3