Strain Fitness in Rahnella sp. WP5 around EX31_RS24050

Experiment: L-Glutamine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24040 and EX31_RS24045 overlap by 4 nucleotidesEX31_RS24045 and EX31_RS24050 overlap by 4 nucleotidesEX31_RS24050 and EX31_RS24055 are separated by 17 nucleotides EX31_RS24040: EX31_RS24040 - ABC transporter ATP-binding protein, at 576,148 to 577,767 _RS24040 EX31_RS24045: EX31_RS24045 - ABC transporter permease, at 577,764 to 578,627 _RS24045 EX31_RS24050: EX31_RS24050 - ABC transporter permease, at 578,624 to 579,583 _RS24050 EX31_RS24055: EX31_RS24055 - TIGR04028 family ABC transporter substrate-binding protein, at 579,601 to 581,241 _RS24055 Position (kb) 578 579 580Strain fitness (log2 ratio) -2 -1 0 1 2 3at 577.674 kb on + strandat 577.675 kb on - strandat 577.746 kb on + strandat 577.746 kb on + strandat 577.818 kb on + strandat 577.819 kb on - strandat 577.819 kb on - strandat 577.819 kb on - strandat 577.870 kb on + strand, within EX31_RS24045at 577.870 kb on + strand, within EX31_RS24045at 577.870 kb on + strand, within EX31_RS24045at 577.870 kb on + strand, within EX31_RS24045at 577.871 kb on - strand, within EX31_RS24045at 577.871 kb on - strand, within EX31_RS24045at 577.874 kb on + strand, within EX31_RS24045at 577.874 kb on + strand, within EX31_RS24045at 577.894 kb on - strand, within EX31_RS24045at 578.062 kb on + strand, within EX31_RS24045at 578.091 kb on + strand, within EX31_RS24045at 578.190 kb on - strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.232 kb on + strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.233 kb on - strand, within EX31_RS24045at 578.365 kb on + strand, within EX31_RS24045at 578.366 kb on - strand, within EX31_RS24045at 578.381 kb on - strand, within EX31_RS24045at 578.381 kb on - strand, within EX31_RS24045at 578.471 kb on - strand, within EX31_RS24045at 578.482 kb on - strand, within EX31_RS24045at 578.482 kb on - strand, within EX31_RS24045at 578.482 kb on - strand, within EX31_RS24045at 578.600 kb on + strandat 578.601 kb on - strandat 578.601 kb on - strandat 578.617 kb on - strandat 578.651 kb on - strandat 578.666 kb on - strandat 578.666 kb on - strandat 578.689 kb on - strandat 578.773 kb on + strand, within EX31_RS24050at 578.989 kb on + strand, within EX31_RS24050at 579.295 kb on + strand, within EX31_RS24050at 579.295 kb on + strand, within EX31_RS24050at 579.305 kb on + strand, within EX31_RS24050at 579.306 kb on - strand, within EX31_RS24050at 579.374 kb on - strand, within EX31_RS24050at 579.381 kb on + strand, within EX31_RS24050at 579.381 kb on + strand, within EX31_RS24050at 579.381 kb on + strand, within EX31_RS24050at 579.382 kb on - strand, within EX31_RS24050at 579.382 kb on - strand, within EX31_RS24050at 579.382 kb on - strand, within EX31_RS24050at 579.382 kb on - strand, within EX31_RS24050at 579.412 kb on - strand, within EX31_RS24050at 579.446 kb on + strand, within EX31_RS24050at 579.447 kb on - strand, within EX31_RS24050at 579.472 kb on + strand, within EX31_RS24050at 579.589 kb on - strandat 579.602 kb on + strandat 579.603 kb on - strandat 579.603 kb on - strandat 579.627 kb on - strandat 579.719 kb on + strandat 579.719 kb on + strandat 579.720 kb on - strandat 579.720 kb on - strandat 579.720 kb on - strandat 579.720 kb on - strandat 579.720 kb on - strandat 579.720 kb on - strandat 579.720 kb on - strandat 579.737 kb on + strandat 579.737 kb on + strandat 579.737 kb on + strandat 579.737 kb on + strandat 579.737 kb on + strandat 579.738 kb on - strandat 579.738 kb on - strandat 579.738 kb on - strandat 579.890 kb on + strand, within EX31_RS24055at 580.005 kb on + strand, within EX31_RS24055at 580.005 kb on + strand, within EX31_RS24055at 580.088 kb on + strand, within EX31_RS24055at 580.088 kb on + strand, within EX31_RS24055at 580.088 kb on + strand, within EX31_RS24055at 580.088 kb on + strand, within EX31_RS24055at 580.089 kb on - strand, within EX31_RS24055at 580.089 kb on - strand, within EX31_RS24055at 580.093 kb on - strand, within EX31_RS24055at 580.093 kb on - strand, within EX31_RS24055at 580.191 kb on - strand, within EX31_RS24055at 580.217 kb on + strand, within EX31_RS24055at 580.217 kb on + strand, within EX31_RS24055at 580.218 kb on - strand, within EX31_RS24055at 580.218 kb on - strand, within EX31_RS24055at 580.218 kb on - strand, within EX31_RS24055at 580.279 kb on - strand, within EX31_RS24055at 580.439 kb on + strand, within EX31_RS24055at 580.439 kb on + strand, within EX31_RS24055at 580.440 kb on - strand, within EX31_RS24055at 580.580 kb on + strand, within EX31_RS24055at 580.580 kb on + strand, within EX31_RS24055

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; shaking
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577,674 + -0.2
577,675 - -1.1
577,746 + -1.0
577,746 + +0.5
577,818 + -0.1
577,819 - -0.1
577,819 - +0.8
577,819 - -0.6
577,870 + EX31_RS24045 0.12 +0.3
577,870 + EX31_RS24045 0.12 -1.2
577,870 + EX31_RS24045 0.12 +0.0
577,870 + EX31_RS24045 0.12 +0.5
577,871 - EX31_RS24045 0.12 +1.7
577,871 - EX31_RS24045 0.12 +1.7
577,874 + EX31_RS24045 0.13 -2.2
577,874 + EX31_RS24045 0.13 -0.7
577,894 - EX31_RS24045 0.15 -0.6
578,062 + EX31_RS24045 0.34 +1.1
578,091 + EX31_RS24045 0.38 +1.7
578,190 - EX31_RS24045 0.49 -0.3
578,232 + EX31_RS24045 0.54 +0.0
578,232 + EX31_RS24045 0.54 -0.2
578,232 + EX31_RS24045 0.54 -0.2
578,232 + EX31_RS24045 0.54 +0.6
578,232 + EX31_RS24045 0.54 +2.4
578,232 + EX31_RS24045 0.54 +0.1
578,232 + EX31_RS24045 0.54 -1.1
578,232 + EX31_RS24045 0.54 +0.9
578,232 + EX31_RS24045 0.54 +1.4
578,232 + EX31_RS24045 0.54 +0.8
578,233 - EX31_RS24045 0.54 -0.7
578,233 - EX31_RS24045 0.54 +0.1
578,233 - EX31_RS24045 0.54 +0.7
578,233 - EX31_RS24045 0.54 +0.9
578,233 - EX31_RS24045 0.54 -0.6
578,233 - EX31_RS24045 0.54 +0.3
578,233 - EX31_RS24045 0.54 +0.6
578,233 - EX31_RS24045 0.54 +1.1
578,233 - EX31_RS24045 0.54 +0.8
578,233 - EX31_RS24045 0.54 +0.3
578,233 - EX31_RS24045 0.54 -0.1
578,233 - EX31_RS24045 0.54 +0.1
578,233 - EX31_RS24045 0.54 -1.6
578,233 - EX31_RS24045 0.54 -0.3
578,233 - EX31_RS24045 0.54 +0.5
578,233 - EX31_RS24045 0.54 -0.6
578,233 - EX31_RS24045 0.54 -0.2
578,365 + EX31_RS24045 0.70 -0.5
578,366 - EX31_RS24045 0.70 +0.1
578,381 - EX31_RS24045 0.71 -0.2
578,381 - EX31_RS24045 0.71 -0.3
578,471 - EX31_RS24045 0.82 -0.7
578,482 - EX31_RS24045 0.83 +0.5
578,482 - EX31_RS24045 0.83 +0.4
578,482 - EX31_RS24045 0.83 -0.1
578,600 + +0.4
578,601 - +0.4
578,601 - -1.2
578,617 - -0.5
578,651 - +0.8
578,666 - -1.6
578,666 - +0.2
578,689 - +0.8
578,773 + EX31_RS24050 0.16 +0.2
578,989 + EX31_RS24050 0.38 -0.4
579,295 + EX31_RS24050 0.70 +2.1
579,295 + EX31_RS24050 0.70 +0.7
579,305 + EX31_RS24050 0.71 -0.5
579,306 - EX31_RS24050 0.71 -0.5
579,374 - EX31_RS24050 0.78 -0.2
579,381 + EX31_RS24050 0.79 -0.6
579,381 + EX31_RS24050 0.79 +0.5
579,381 + EX31_RS24050 0.79 -0.9
579,382 - EX31_RS24050 0.79 +0.7
579,382 - EX31_RS24050 0.79 -1.3
579,382 - EX31_RS24050 0.79 -0.8
579,382 - EX31_RS24050 0.79 -0.1
579,412 - EX31_RS24050 0.82 +0.3
579,446 + EX31_RS24050 0.86 -0.8
579,447 - EX31_RS24050 0.86 -1.0
579,472 + EX31_RS24050 0.88 +1.7
579,589 - +1.4
579,602 + -0.5
579,603 - +0.9
579,603 - +0.2
579,627 - -0.0
579,719 + +0.8
579,719 + +1.4
579,720 - +0.8
579,720 - +0.1
579,720 - +0.3
579,720 - -0.3
579,720 - +0.1
579,720 - +0.3
579,720 - -0.0
579,737 + -1.9
579,737 + +0.6
579,737 + +0.5
579,737 + +0.3
579,737 + -1.0
579,738 - +0.1
579,738 - +0.1
579,738 - +0.4
579,890 + EX31_RS24055 0.18 +0.4
580,005 + EX31_RS24055 0.25 +0.5
580,005 + EX31_RS24055 0.25 -1.0
580,088 + EX31_RS24055 0.30 -0.2
580,088 + EX31_RS24055 0.30 +1.0
580,088 + EX31_RS24055 0.30 +0.6
580,088 + EX31_RS24055 0.30 +3.1
580,089 - EX31_RS24055 0.30 +0.7
580,089 - EX31_RS24055 0.30 -0.2
580,093 - EX31_RS24055 0.30 -0.3
580,093 - EX31_RS24055 0.30 -0.3
580,191 - EX31_RS24055 0.36 -0.8
580,217 + EX31_RS24055 0.38 +0.5
580,217 + EX31_RS24055 0.38 +0.5
580,218 - EX31_RS24055 0.38 -0.8
580,218 - EX31_RS24055 0.38 +0.2
580,218 - EX31_RS24055 0.38 -0.3
580,279 - EX31_RS24055 0.41 -0.3
580,439 + EX31_RS24055 0.51 +0.3
580,439 + EX31_RS24055 0.51 +0.1
580,440 - EX31_RS24055 0.51 -0.6
580,580 + EX31_RS24055 0.60 -0.3
580,580 + EX31_RS24055 0.60 -0.3

Or see this region's nucleotide sequence