Strain Fitness in Rahnella sp. WP5 around EX31_RS10690

Experiment: L-Glutamine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10680 and EX31_RS10685 overlap by 4 nucleotidesEX31_RS10685 and EX31_RS10690 are separated by 44 nucleotidesEX31_RS10690 and EX31_RS10695 are separated by 153 nucleotidesEX31_RS10695 and EX31_RS10700 are separated by 101 nucleotides EX31_RS10680: EX31_RS10680 - zinc ABC transporter ATP-binding protein ZnuC, at 53,898 to 54,656 _RS10680 EX31_RS10685: EX31_RS10685 - zinc ABC transporter permease subunit ZnuB, at 54,653 to 55,438 _RS10685 EX31_RS10690: EX31_RS10690 - sodium:proton antiporter, at 55,483 to 56,862 _RS10690 EX31_RS10695: EX31_RS10695 - EthD family reductase, at 57,016 to 57,321 _RS10695 EX31_RS10700: EX31_RS10700 - hypothetical protein, at 57,423 to 57,749 _RS10700 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.690 kb on + strandat 54.690 kb on + strandat 54.690 kb on + strandat 54.691 kb on - strandat 54.691 kb on - strandat 54.691 kb on - strandat 54.691 kb on - strandat 54.749 kb on + strand, within EX31_RS10685at 54.790 kb on - strand, within EX31_RS10685at 54.813 kb on + strand, within EX31_RS10685at 54.813 kb on + strand, within EX31_RS10685at 54.813 kb on + strand, within EX31_RS10685at 54.813 kb on + strand, within EX31_RS10685at 54.813 kb on + strand, within EX31_RS10685at 54.813 kb on + strand, within EX31_RS10685at 54.824 kb on + strand, within EX31_RS10685at 54.824 kb on + strand, within EX31_RS10685at 54.846 kb on + strand, within EX31_RS10685at 54.846 kb on + strand, within EX31_RS10685at 54.861 kb on + strand, within EX31_RS10685at 54.916 kb on + strand, within EX31_RS10685at 54.916 kb on + strand, within EX31_RS10685at 54.972 kb on + strand, within EX31_RS10685at 54.972 kb on + strand, within EX31_RS10685at 54.973 kb on - strand, within EX31_RS10685at 54.992 kb on + strand, within EX31_RS10685at 54.992 kb on + strand, within EX31_RS10685at 54.993 kb on - strand, within EX31_RS10685at 54.993 kb on - strand, within EX31_RS10685at 55.159 kb on + strand, within EX31_RS10685at 55.159 kb on + strand, within EX31_RS10685at 55.243 kb on + strand, within EX31_RS10685at 55.243 kb on + strand, within EX31_RS10685at 55.355 kb on + strand, within EX31_RS10685at 55.355 kb on + strand, within EX31_RS10685at 55.355 kb on + strand, within EX31_RS10685at 55.355 kb on + strand, within EX31_RS10685at 55.355 kb on + strand, within EX31_RS10685at 55.355 kb on + strand, within EX31_RS10685at 55.355 kb on + strand, within EX31_RS10685at 55.355 kb on + strand, within EX31_RS10685at 55.360 kb on + strandat 55.360 kb on + strandat 55.361 kb on - strandat 55.405 kb on + strandat 55.580 kb on - strandat 55.580 kb on - strandat 55.580 kb on - strandat 55.633 kb on - strand, within EX31_RS10690at 55.633 kb on - strand, within EX31_RS10690at 55.634 kb on + strand, within EX31_RS10690at 55.634 kb on + strand, within EX31_RS10690at 55.634 kb on + strand, within EX31_RS10690at 55.634 kb on + strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.635 kb on - strand, within EX31_RS10690at 55.680 kb on + strand, within EX31_RS10690at 55.680 kb on + strand, within EX31_RS10690at 55.682 kb on + strand, within EX31_RS10690at 55.682 kb on + strand, within EX31_RS10690at 55.683 kb on - strand, within EX31_RS10690at 55.683 kb on - strand, within EX31_RS10690at 55.683 kb on - strand, within EX31_RS10690at 55.683 kb on - strand, within EX31_RS10690at 55.683 kb on - strand, within EX31_RS10690at 55.690 kb on - strand, within EX31_RS10690at 55.750 kb on + strand, within EX31_RS10690at 55.751 kb on - strand, within EX31_RS10690at 55.751 kb on - strand, within EX31_RS10690at 55.751 kb on - strand, within EX31_RS10690at 55.767 kb on + strand, within EX31_RS10690at 55.769 kb on + strand, within EX31_RS10690at 55.769 kb on + strand, within EX31_RS10690at 55.769 kb on + strand, within EX31_RS10690at 55.770 kb on - strand, within EX31_RS10690at 55.770 kb on - strand, within EX31_RS10690at 55.770 kb on - strand, within EX31_RS10690at 55.770 kb on - strand, within EX31_RS10690at 56.185 kb on - strand, within EX31_RS10690at 56.216 kb on - strand, within EX31_RS10690at 56.314 kb on + strand, within EX31_RS10690at 56.314 kb on + strand, within EX31_RS10690at 56.515 kb on - strand, within EX31_RS10690at 56.521 kb on - strand, within EX31_RS10690at 56.525 kb on + strand, within EX31_RS10690at 56.525 kb on + strand, within EX31_RS10690at 56.525 kb on + strand, within EX31_RS10690at 56.526 kb on - strand, within EX31_RS10690at 56.526 kb on - strand, within EX31_RS10690at 56.560 kb on + strand, within EX31_RS10690at 56.561 kb on - strand, within EX31_RS10690at 56.641 kb on - strand, within EX31_RS10690at 56.644 kb on + strand, within EX31_RS10690at 56.645 kb on - strand, within EX31_RS10690at 56.645 kb on - strand, within EX31_RS10690at 56.645 kb on - strand, within EX31_RS10690at 56.760 kb on - strandat 56.761 kb on + strandat 56.761 kb on + strandat 56.762 kb on - strandat 56.762 kb on - strandat 56.814 kb on + strandat 56.814 kb on + strandat 56.815 kb on - strandat 56.815 kb on - strandat 56.822 kb on - strandat 56.866 kb on + strandat 56.867 kb on - strandat 56.867 kb on - strandat 56.876 kb on + strandat 56.877 kb on - strandat 56.877 kb on - strandat 56.888 kb on + strandat 56.888 kb on + strandat 56.897 kb on + strandat 56.898 kb on - strandat 56.900 kb on + strandat 56.900 kb on + strandat 56.900 kb on + strandat 56.900 kb on + strandat 56.901 kb on - strandat 56.901 kb on - strandat 56.901 kb on - strandat 56.901 kb on - strandat 56.906 kb on + strandat 56.930 kb on + strandat 56.934 kb on + strandat 56.935 kb on - strandat 56.960 kb on + strandat 56.960 kb on + strandat 57.022 kb on - strandat 57.026 kb on - strandat 57.045 kb on + strandat 57.074 kb on - strand, within EX31_RS10695at 57.093 kb on - strand, within EX31_RS10695at 57.133 kb on + strand, within EX31_RS10695at 57.134 kb on - strand, within EX31_RS10695at 57.144 kb on + strand, within EX31_RS10695at 57.196 kb on - strand, within EX31_RS10695at 57.199 kb on + strand, within EX31_RS10695at 57.199 kb on + strand, within EX31_RS10695at 57.199 kb on + strand, within EX31_RS10695at 57.199 kb on + strand, within EX31_RS10695at 57.199 kb on + strand, within EX31_RS10695at 57.199 kb on + strand, within EX31_RS10695at 57.200 kb on - strand, within EX31_RS10695at 57.200 kb on - strand, within EX31_RS10695at 57.200 kb on - strand, within EX31_RS10695at 57.200 kb on - strand, within EX31_RS10695at 57.200 kb on - strand, within EX31_RS10695at 57.267 kb on - strand, within EX31_RS10695at 57.358 kb on - strandat 57.403 kb on - strandat 57.404 kb on + strandat 57.405 kb on - strandat 57.405 kb on - strandat 57.425 kb on - strandat 57.436 kb on - strandat 57.573 kb on - strand, within EX31_RS10700at 57.579 kb on - strand, within EX31_RS10700at 57.579 kb on - strand, within EX31_RS10700at 57.579 kb on - strand, within EX31_RS10700at 57.647 kb on + strand, within EX31_RS10700at 57.651 kb on + strand, within EX31_RS10700

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; shaking
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54,690 + -0.0
54,690 + -0.4
54,690 + +0.4
54,691 - +0.4
54,691 - +0.5
54,691 - -0.2
54,691 - +1.0
54,749 + EX31_RS10685 0.12 -0.1
54,790 - EX31_RS10685 0.17 +0.3
54,813 + EX31_RS10685 0.20 +1.8
54,813 + EX31_RS10685 0.20 +0.2
54,813 + EX31_RS10685 0.20 +0.1
54,813 + EX31_RS10685 0.20 +0.1
54,813 + EX31_RS10685 0.20 +0.1
54,813 + EX31_RS10685 0.20 +0.6
54,824 + EX31_RS10685 0.22 +0.0
54,824 + EX31_RS10685 0.22 -1.3
54,846 + EX31_RS10685 0.25 -0.7
54,846 + EX31_RS10685 0.25 +0.2
54,861 + EX31_RS10685 0.26 +2.6
54,916 + EX31_RS10685 0.33 +0.6
54,916 + EX31_RS10685 0.33 +0.8
54,972 + EX31_RS10685 0.41 +1.1
54,972 + EX31_RS10685 0.41 +0.6
54,973 - EX31_RS10685 0.41 -0.4
54,992 + EX31_RS10685 0.43 -0.1
54,992 + EX31_RS10685 0.43 -0.5
54,993 - EX31_RS10685 0.43 +0.6
54,993 - EX31_RS10685 0.43 -0.8
55,159 + EX31_RS10685 0.64 -0.6
55,159 + EX31_RS10685 0.64 +0.3
55,243 + EX31_RS10685 0.75 +0.4
55,243 + EX31_RS10685 0.75 +0.6
55,355 + EX31_RS10685 0.89 +1.0
55,355 + EX31_RS10685 0.89 +0.2
55,355 + EX31_RS10685 0.89 +0.0
55,355 + EX31_RS10685 0.89 +0.6
55,355 + EX31_RS10685 0.89 +0.5
55,355 + EX31_RS10685 0.89 +0.3
55,355 + EX31_RS10685 0.89 +0.6
55,355 + EX31_RS10685 0.89 +0.2
55,360 + -1.7
55,360 + +0.7
55,361 - +1.0
55,405 + +1.0
55,580 - +1.8
55,580 - -0.1
55,580 - +0.6
55,633 - EX31_RS10690 0.11 -0.1
55,633 - EX31_RS10690 0.11 +0.4
55,634 + EX31_RS10690 0.11 +0.7
55,634 + EX31_RS10690 0.11 -0.5
55,634 + EX31_RS10690 0.11 +2.4
55,634 + EX31_RS10690 0.11 -0.7
55,635 - EX31_RS10690 0.11 -0.4
55,635 - EX31_RS10690 0.11 +2.6
55,635 - EX31_RS10690 0.11 -0.4
55,635 - EX31_RS10690 0.11 +0.0
55,635 - EX31_RS10690 0.11 -0.2
55,635 - EX31_RS10690 0.11 +1.2
55,635 - EX31_RS10690 0.11 +1.4
55,635 - EX31_RS10690 0.11 -0.5
55,635 - EX31_RS10690 0.11 +1.4
55,680 + EX31_RS10690 0.14 -0.7
55,680 + EX31_RS10690 0.14 +1.4
55,682 + EX31_RS10690 0.14 +1.4
55,682 + EX31_RS10690 0.14 +1.3
55,683 - EX31_RS10690 0.14 +0.7
55,683 - EX31_RS10690 0.14 -0.7
55,683 - EX31_RS10690 0.14 -0.4
55,683 - EX31_RS10690 0.14 -0.4
55,683 - EX31_RS10690 0.14 +0.8
55,690 - EX31_RS10690 0.15 -0.1
55,750 + EX31_RS10690 0.19 +1.9
55,751 - EX31_RS10690 0.19 +0.3
55,751 - EX31_RS10690 0.19 +1.3
55,751 - EX31_RS10690 0.19 +0.4
55,767 + EX31_RS10690 0.21 +0.9
55,769 + EX31_RS10690 0.21 +0.7
55,769 + EX31_RS10690 0.21 +0.0
55,769 + EX31_RS10690 0.21 -1.0
55,770 - EX31_RS10690 0.21 +0.5
55,770 - EX31_RS10690 0.21 +0.2
55,770 - EX31_RS10690 0.21 +1.0
55,770 - EX31_RS10690 0.21 +1.2
56,185 - EX31_RS10690 0.51 +0.8
56,216 - EX31_RS10690 0.53 +0.6
56,314 + EX31_RS10690 0.60 -0.1
56,314 + EX31_RS10690 0.60 +0.0
56,515 - EX31_RS10690 0.75 +0.2
56,521 - EX31_RS10690 0.75 +0.4
56,525 + EX31_RS10690 0.76 +1.2
56,525 + EX31_RS10690 0.76 +0.6
56,525 + EX31_RS10690 0.76 +0.0
56,526 - EX31_RS10690 0.76 +0.5
56,526 - EX31_RS10690 0.76 +1.5
56,560 + EX31_RS10690 0.78 -0.8
56,561 - EX31_RS10690 0.78 +1.6
56,641 - EX31_RS10690 0.84 +0.3
56,644 + EX31_RS10690 0.84 +0.5
56,645 - EX31_RS10690 0.84 -0.4
56,645 - EX31_RS10690 0.84 +0.2
56,645 - EX31_RS10690 0.84 +0.3
56,760 - -1.4
56,761 + +1.9
56,761 + +0.0
56,762 - -0.6
56,762 - -0.3
56,814 + +0.4
56,814 + +0.8
56,815 - +0.3
56,815 - +0.3
56,822 - +1.6
56,866 + +0.1
56,867 - +0.3
56,867 - -0.3
56,876 + -0.4
56,877 - +0.2
56,877 - -0.7
56,888 + -0.5
56,888 + +1.0
56,897 + -0.1
56,898 - +1.6
56,900 + +0.7
56,900 + +0.9
56,900 + -1.4
56,900 + +0.5
56,901 - +1.6
56,901 - -0.5
56,901 - +0.8
56,901 - -0.4
56,906 + +0.4
56,930 + +1.9
56,934 + +0.0
56,935 - -0.1
56,960 + +1.0
56,960 + +1.2
57,022 - -1.0
57,026 - +0.2
57,045 + +0.0
57,074 - EX31_RS10695 0.19 -0.1
57,093 - EX31_RS10695 0.25 +1.6
57,133 + EX31_RS10695 0.38 -2.6
57,134 - EX31_RS10695 0.39 -0.4
57,144 + EX31_RS10695 0.42 -0.0
57,196 - EX31_RS10695 0.59 +1.6
57,199 + EX31_RS10695 0.60 -0.7
57,199 + EX31_RS10695 0.60 +0.0
57,199 + EX31_RS10695 0.60 +0.4
57,199 + EX31_RS10695 0.60 +0.4
57,199 + EX31_RS10695 0.60 +1.6
57,199 + EX31_RS10695 0.60 +0.0
57,200 - EX31_RS10695 0.60 -0.4
57,200 - EX31_RS10695 0.60 +0.6
57,200 - EX31_RS10695 0.60 +0.7
57,200 - EX31_RS10695 0.60 +0.0
57,200 - EX31_RS10695 0.60 +0.1
57,267 - EX31_RS10695 0.82 +0.4
57,358 - +0.4
57,403 - -0.4
57,404 + +0.6
57,405 - -1.0
57,405 - +0.4
57,425 - -0.5
57,436 - +0.1
57,573 - EX31_RS10700 0.46 +0.3
57,579 - EX31_RS10700 0.48 -1.5
57,579 - EX31_RS10700 0.48 -0.3
57,579 - EX31_RS10700 0.48 -0.7
57,647 + EX31_RS10700 0.69 +2.4
57,651 + EX31_RS10700 0.70 +0.3

Or see this region's nucleotide sequence