Strain Fitness in Caulobacter crescentus NA1000 around CCNA_R0021

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00976 and CCNA_R0021 are separated by 173 nucleotidesCCNA_R0021 and CCNA_R0022 are separated by 164 nucleotidesCCNA_R0022 and CCNA_00977 are separated by 94 nucleotidesCCNA_00977 and CCNA_00978 are separated by 14 nucleotides CCNA_00976: CCNA_00976 - signal peptide peptidase A, at 1,055,002 to 1,056,786 _00976 CCNA_R0021: CCNA_R0021 - tRNA-Pro, at 1,056,960 to 1,057,036 _R0021 CCNA_R0022: CCNA_R0022 - tRNA-Gln, at 1,057,201 to 1,057,274 _R0022 CCNA_00977: CCNA_00977 - transposase, IS4/5 family, at 1,057,369 to 1,057,779 _00977 CCNA_00978: CCNA_00978 - transposase, DDE family, at 1,057,794 to 1,058,162 _00978 Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -2 -1 0 1at 1056.032 kb on + strand, within CCNA_00976at 1056.370 kb on + strand, within CCNA_00976at 1056.486 kb on - strand, within CCNA_00976at 1056.818 kb on - strandat 1056.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,056,032 + CCNA_00976 0.58 -1.1
1,056,370 + CCNA_00976 0.77 -1.3
1,056,486 - CCNA_00976 0.83 -2.2
1,056,818 - -0.7
1,056,833 - -0.5

Or see this region's nucleotide sequence