Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02614

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02612 and CCNA_02613 are separated by 186 nucleotidesCCNA_02613 and CCNA_02614 overlap by 4 nucleotidesCCNA_02614 and CCNA_02615 are separated by 115 nucleotides CCNA_02612: CCNA_02612 - alanyl-tRNA synthetase, at 2,758,473 to 2,761,115 _02612 CCNA_02613: CCNA_02613 - Rieske (2Fe-2S) domain protein, at 2,761,302 to 2,761,682 _02613 CCNA_02614: CCNA_02614 - fumarylacetoacetase superfamily protein, at 2,761,679 to 2,762,686 _02614 CCNA_02615: CCNA_02615 - homogentisate 1,2-dioxygenase, at 2,762,802 to 2,764,079 _02615 Position (kb) 2761 2762 2763Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2761.160 kb on - strandat 2761.178 kb on - strandat 2761.178 kb on - strandat 2761.218 kb on + strandat 2761.226 kb on - strandat 2761.279 kb on + strandat 2761.309 kb on + strandat 2761.319 kb on + strandat 2761.322 kb on + strandat 2761.324 kb on + strandat 2761.337 kb on - strandat 2761.345 kb on + strand, within CCNA_02613at 2761.345 kb on + strand, within CCNA_02613at 2761.345 kb on + strand, within CCNA_02613at 2761.345 kb on + strand, within CCNA_02613at 2761.345 kb on + strand, within CCNA_02613at 2761.353 kb on - strand, within CCNA_02613at 2761.353 kb on - strand, within CCNA_02613at 2761.353 kb on - strand, within CCNA_02613at 2761.353 kb on - strand, within CCNA_02613at 2761.353 kb on - strand, within CCNA_02613at 2761.389 kb on + strand, within CCNA_02613at 2761.389 kb on + strand, within CCNA_02613at 2761.389 kb on + strand, within CCNA_02613at 2761.396 kb on + strand, within CCNA_02613at 2761.396 kb on + strand, within CCNA_02613at 2761.396 kb on + strand, within CCNA_02613at 2761.404 kb on - strand, within CCNA_02613at 2761.404 kb on - strand, within CCNA_02613at 2761.404 kb on - strand, within CCNA_02613at 2761.404 kb on - strand, within CCNA_02613at 2761.404 kb on - strand, within CCNA_02613at 2761.404 kb on - strand, within CCNA_02613at 2761.431 kb on - strand, within CCNA_02613at 2761.463 kb on + strand, within CCNA_02613at 2761.505 kb on - strand, within CCNA_02613at 2761.505 kb on - strand, within CCNA_02613at 2761.512 kb on - strand, within CCNA_02613at 2761.535 kb on + strand, within CCNA_02613at 2761.535 kb on + strand, within CCNA_02613at 2761.542 kb on + strand, within CCNA_02613at 2761.598 kb on - strand, within CCNA_02613at 2761.618 kb on + strand, within CCNA_02613at 2761.627 kb on - strand, within CCNA_02613at 2761.644 kb on + strand, within CCNA_02613at 2761.647 kb on - strandat 2761.676 kb on - strandat 2761.677 kb on + strandat 2761.786 kb on - strand, within CCNA_02614at 2761.793 kb on + strand, within CCNA_02614at 2761.793 kb on + strand, within CCNA_02614at 2761.801 kb on - strand, within CCNA_02614at 2761.801 kb on - strand, within CCNA_02614at 2761.801 kb on - strand, within CCNA_02614at 2761.802 kb on + strand, within CCNA_02614at 2761.810 kb on - strand, within CCNA_02614at 2761.811 kb on + strand, within CCNA_02614at 2761.812 kb on - strand, within CCNA_02614at 2761.814 kb on + strand, within CCNA_02614at 2761.828 kb on + strand, within CCNA_02614at 2761.970 kb on + strand, within CCNA_02614at 2761.976 kb on + strand, within CCNA_02614at 2762.011 kb on - strand, within CCNA_02614at 2762.011 kb on - strand, within CCNA_02614at 2762.040 kb on - strand, within CCNA_02614at 2762.049 kb on - strand, within CCNA_02614at 2762.050 kb on - strand, within CCNA_02614at 2762.089 kb on - strand, within CCNA_02614at 2762.132 kb on + strand, within CCNA_02614at 2762.140 kb on - strand, within CCNA_02614at 2762.147 kb on - strand, within CCNA_02614at 2762.147 kb on - strand, within CCNA_02614at 2762.162 kb on - strand, within CCNA_02614at 2762.166 kb on - strand, within CCNA_02614at 2762.174 kb on + strand, within CCNA_02614at 2762.181 kb on + strand, within CCNA_02614at 2762.189 kb on + strand, within CCNA_02614at 2762.218 kb on - strand, within CCNA_02614at 2762.264 kb on - strand, within CCNA_02614at 2762.354 kb on - strand, within CCNA_02614at 2762.354 kb on - strand, within CCNA_02614at 2762.365 kb on - strand, within CCNA_02614at 2762.367 kb on + strand, within CCNA_02614at 2762.394 kb on - strand, within CCNA_02614at 2762.452 kb on - strand, within CCNA_02614at 2762.479 kb on + strand, within CCNA_02614at 2762.526 kb on + strand, within CCNA_02614at 2762.664 kb on + strandat 2762.664 kb on + strandat 2762.672 kb on - strandat 2762.672 kb on - strandat 2762.680 kb on + strandat 2762.741 kb on - strandat 2762.762 kb on - strandat 2762.767 kb on - strandat 2762.795 kb on + strandat 2762.805 kb on + strandat 2762.808 kb on - strandat 2762.813 kb on - strandat 2762.860 kb on + strandat 2762.861 kb on - strandat 2762.861 kb on - strandat 2762.861 kb on - strandat 2762.861 kb on - strandat 2762.861 kb on - strandat 2762.861 kb on - strandat 2762.947 kb on + strand, within CCNA_02615at 2762.983 kb on - strand, within CCNA_02615at 2762.984 kb on + strand, within CCNA_02615at 2762.984 kb on + strand, within CCNA_02615at 2763.017 kb on - strand, within CCNA_02615at 2763.077 kb on - strand, within CCNA_02615at 2763.179 kb on + strand, within CCNA_02615at 2763.179 kb on + strand, within CCNA_02615at 2763.201 kb on + strand, within CCNA_02615at 2763.201 kb on + strand, within CCNA_02615at 2763.201 kb on + strand, within CCNA_02615at 2763.201 kb on + strand, within CCNA_02615at 2763.201 kb on + strand, within CCNA_02615at 2763.201 kb on + strand, within CCNA_02615at 2763.209 kb on - strand, within CCNA_02615at 2763.209 kb on - strand, within CCNA_02615at 2763.209 kb on - strand, within CCNA_02615at 2763.209 kb on - strand, within CCNA_02615at 2763.209 kb on - strand, within CCNA_02615at 2763.224 kb on + strand, within CCNA_02615at 2763.231 kb on - strand, within CCNA_02615at 2763.231 kb on - strand, within CCNA_02615at 2763.232 kb on - strand, within CCNA_02615at 2763.233 kb on + strand, within CCNA_02615at 2763.233 kb on + strand, within CCNA_02615at 2763.233 kb on + strand, within CCNA_02615at 2763.233 kb on + strand, within CCNA_02615at 2763.233 kb on + strand, within CCNA_02615at 2763.233 kb on + strand, within CCNA_02615at 2763.241 kb on - strand, within CCNA_02615at 2763.241 kb on - strand, within CCNA_02615at 2763.241 kb on - strand, within CCNA_02615at 2763.241 kb on - strand, within CCNA_02615at 2763.241 kb on - strand, within CCNA_02615at 2763.241 kb on - strand, within CCNA_02615at 2763.241 kb on - strand, within CCNA_02615at 2763.246 kb on - strand, within CCNA_02615at 2763.264 kb on - strand, within CCNA_02615at 2763.280 kb on - strand, within CCNA_02615at 2763.280 kb on - strand, within CCNA_02615at 2763.290 kb on + strand, within CCNA_02615at 2763.322 kb on - strand, within CCNA_02615at 2763.346 kb on - strand, within CCNA_02615at 2763.423 kb on - strand, within CCNA_02615at 2763.435 kb on + strand, within CCNA_02615at 2763.435 kb on + strand, within CCNA_02615at 2763.471 kb on - strand, within CCNA_02615at 2763.473 kb on + strand, within CCNA_02615at 2763.474 kb on + strand, within CCNA_02615at 2763.501 kb on + strand, within CCNA_02615at 2763.519 kb on + strand, within CCNA_02615at 2763.529 kb on - strand, within CCNA_02615at 2763.554 kb on + strand, within CCNA_02615at 2763.567 kb on - strand, within CCNA_02615at 2763.569 kb on + strand, within CCNA_02615at 2763.580 kb on + strand, within CCNA_02615at 2763.588 kb on - strand, within CCNA_02615at 2763.644 kb on - strand, within CCNA_02615at 2763.657 kb on + strand, within CCNA_02615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,761,160 - -2.3
2,761,178 - +1.4
2,761,178 - +2.4
2,761,218 + -1.2
2,761,226 - +0.6
2,761,279 + -2.7
2,761,309 + +1.7
2,761,319 + -1.2
2,761,322 + -1.1
2,761,324 + +0.6
2,761,337 - +0.6
2,761,345 + CCNA_02613 0.11 +0.1
2,761,345 + CCNA_02613 0.11 +1.2
2,761,345 + CCNA_02613 0.11 +0.0
2,761,345 + CCNA_02613 0.11 +0.7
2,761,345 + CCNA_02613 0.11 -0.4
2,761,353 - CCNA_02613 0.13 +0.3
2,761,353 - CCNA_02613 0.13 +2.4
2,761,353 - CCNA_02613 0.13 +0.7
2,761,353 - CCNA_02613 0.13 +1.6
2,761,353 - CCNA_02613 0.13 -1.0
2,761,389 + CCNA_02613 0.23 -0.6
2,761,389 + CCNA_02613 0.23 -1.8
2,761,389 + CCNA_02613 0.23 -0.5
2,761,396 + CCNA_02613 0.25 -1.0
2,761,396 + CCNA_02613 0.25 +0.0
2,761,396 + CCNA_02613 0.25 +0.3
2,761,404 - CCNA_02613 0.27 +1.4
2,761,404 - CCNA_02613 0.27 +1.2
2,761,404 - CCNA_02613 0.27 -1.8
2,761,404 - CCNA_02613 0.27 +1.2
2,761,404 - CCNA_02613 0.27 -0.3
2,761,404 - CCNA_02613 0.27 -0.4
2,761,431 - CCNA_02613 0.34 +0.2
2,761,463 + CCNA_02613 0.42 +0.5
2,761,505 - CCNA_02613 0.53 +0.7
2,761,505 - CCNA_02613 0.53 +0.8
2,761,512 - CCNA_02613 0.55 +0.2
2,761,535 + CCNA_02613 0.61 +0.7
2,761,535 + CCNA_02613 0.61 -0.9
2,761,542 + CCNA_02613 0.63 -0.7
2,761,598 - CCNA_02613 0.78 +1.4
2,761,618 + CCNA_02613 0.83 -2.8
2,761,627 - CCNA_02613 0.85 +2.1
2,761,644 + CCNA_02613 0.90 +1.1
2,761,647 - +0.4
2,761,676 - +1.7
2,761,677 + -0.6
2,761,786 - CCNA_02614 0.11 +2.2
2,761,793 + CCNA_02614 0.11 -1.5
2,761,793 + CCNA_02614 0.11 +0.4
2,761,801 - CCNA_02614 0.12 +1.3
2,761,801 - CCNA_02614 0.12 +1.3
2,761,801 - CCNA_02614 0.12 -0.6
2,761,802 + CCNA_02614 0.12 -0.8
2,761,810 - CCNA_02614 0.13 +1.4
2,761,811 + CCNA_02614 0.13 +1.9
2,761,812 - CCNA_02614 0.13 -0.3
2,761,814 + CCNA_02614 0.13 +1.7
2,761,828 + CCNA_02614 0.15 +0.4
2,761,970 + CCNA_02614 0.29 -0.3
2,761,976 + CCNA_02614 0.29 +0.3
2,762,011 - CCNA_02614 0.33 +1.3
2,762,011 - CCNA_02614 0.33 +1.7
2,762,040 - CCNA_02614 0.36 +1.1
2,762,049 - CCNA_02614 0.37 +0.5
2,762,050 - CCNA_02614 0.37 +1.5
2,762,089 - CCNA_02614 0.41 +2.3
2,762,132 + CCNA_02614 0.45 -0.4
2,762,140 - CCNA_02614 0.46 +0.2
2,762,147 - CCNA_02614 0.46 +1.7
2,762,147 - CCNA_02614 0.46 +0.7
2,762,162 - CCNA_02614 0.48 +1.1
2,762,166 - CCNA_02614 0.48 +1.3
2,762,174 + CCNA_02614 0.49 -0.9
2,762,181 + CCNA_02614 0.50 -1.9
2,762,189 + CCNA_02614 0.51 +0.1
2,762,218 - CCNA_02614 0.53 +1.7
2,762,264 - CCNA_02614 0.58 +0.6
2,762,354 - CCNA_02614 0.67 +1.8
2,762,354 - CCNA_02614 0.67 +1.2
2,762,365 - CCNA_02614 0.68 +2.4
2,762,367 + CCNA_02614 0.68 +1.2
2,762,394 - CCNA_02614 0.71 +1.0
2,762,452 - CCNA_02614 0.77 +0.6
2,762,479 + CCNA_02614 0.79 -1.4
2,762,526 + CCNA_02614 0.84 +0.2
2,762,664 + -1.1
2,762,664 + +0.1
2,762,672 - +1.3
2,762,672 - +2.4
2,762,680 + -0.4
2,762,741 - +2.2
2,762,762 - +1.3
2,762,767 - +1.4
2,762,795 + -1.6
2,762,805 + +1.2
2,762,808 - +0.8
2,762,813 - +2.5
2,762,860 + -1.8
2,762,861 - +1.9
2,762,861 - +1.2
2,762,861 - +2.0
2,762,861 - +1.2
2,762,861 - +1.3
2,762,861 - +1.4
2,762,947 + CCNA_02615 0.11 -0.7
2,762,983 - CCNA_02615 0.14 +0.9
2,762,984 + CCNA_02615 0.14 +0.2
2,762,984 + CCNA_02615 0.14 +1.1
2,763,017 - CCNA_02615 0.17 -0.4
2,763,077 - CCNA_02615 0.22 +0.9
2,763,179 + CCNA_02615 0.29 -0.9
2,763,179 + CCNA_02615 0.29 -1.7
2,763,201 + CCNA_02615 0.31 -1.8
2,763,201 + CCNA_02615 0.31 -1.5
2,763,201 + CCNA_02615 0.31 -1.6
2,763,201 + CCNA_02615 0.31 -1.5
2,763,201 + CCNA_02615 0.31 +0.8
2,763,201 + CCNA_02615 0.31 -1.3
2,763,209 - CCNA_02615 0.32 +0.4
2,763,209 - CCNA_02615 0.32 +1.9
2,763,209 - CCNA_02615 0.32 +1.6
2,763,209 - CCNA_02615 0.32 +1.3
2,763,209 - CCNA_02615 0.32 +0.6
2,763,224 + CCNA_02615 0.33 -0.3
2,763,231 - CCNA_02615 0.34 +1.1
2,763,231 - CCNA_02615 0.34 +1.8
2,763,232 - CCNA_02615 0.34 +0.8
2,763,233 + CCNA_02615 0.34 -1.6
2,763,233 + CCNA_02615 0.34 -2.0
2,763,233 + CCNA_02615 0.34 -0.3
2,763,233 + CCNA_02615 0.34 +0.6
2,763,233 + CCNA_02615 0.34 -2.8
2,763,233 + CCNA_02615 0.34 -1.6
2,763,241 - CCNA_02615 0.34 +0.9
2,763,241 - CCNA_02615 0.34 +0.2
2,763,241 - CCNA_02615 0.34 +0.9
2,763,241 - CCNA_02615 0.34 +0.7
2,763,241 - CCNA_02615 0.34 +2.4
2,763,241 - CCNA_02615 0.34 +1.2
2,763,241 - CCNA_02615 0.34 +0.8
2,763,246 - CCNA_02615 0.35 +0.5
2,763,264 - CCNA_02615 0.36 +0.8
2,763,280 - CCNA_02615 0.37 +1.4
2,763,280 - CCNA_02615 0.37 +2.2
2,763,290 + CCNA_02615 0.38 -0.3
2,763,322 - CCNA_02615 0.41 +0.5
2,763,346 - CCNA_02615 0.43 +0.7
2,763,423 - CCNA_02615 0.49 +1.4
2,763,435 + CCNA_02615 0.50 +0.3
2,763,435 + CCNA_02615 0.50 +2.0
2,763,471 - CCNA_02615 0.52 +1.8
2,763,473 + CCNA_02615 0.53 +0.4
2,763,474 + CCNA_02615 0.53 +0.8
2,763,501 + CCNA_02615 0.55 +0.2
2,763,519 + CCNA_02615 0.56 -1.8
2,763,529 - CCNA_02615 0.57 +0.6
2,763,554 + CCNA_02615 0.59 -2.4
2,763,567 - CCNA_02615 0.60 +1.5
2,763,569 + CCNA_02615 0.60 -2.5
2,763,580 + CCNA_02615 0.61 -1.4
2,763,588 - CCNA_02615 0.62 +1.0
2,763,644 - CCNA_02615 0.66 +1.1
2,763,657 + CCNA_02615 0.67 -1.8

Or see this region's nucleotide sequence