Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02612 and CCNA_02613 are separated by 186 nucleotides CCNA_02613 and CCNA_02614 overlap by 4 nucleotides CCNA_02614 and CCNA_02615 are separated by 115 nucleotides
CCNA_02612: CCNA_02612 - alanyl-tRNA synthetase, at 2,758,473 to 2,761,115
_02612
CCNA_02613: CCNA_02613 - Rieske (2Fe-2S) domain protein, at 2,761,302 to 2,761,682
_02613
CCNA_02614: CCNA_02614 - fumarylacetoacetase superfamily protein, at 2,761,679 to 2,762,686
_02614
CCNA_02615: CCNA_02615 - homogentisate 1,2-dioxygenase, at 2,762,802 to 2,764,079
_02615
Position (kb)
2761
2762
2763 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2761.160 kb on - strand at 2761.178 kb on - strand at 2761.178 kb on - strand at 2761.218 kb on + strand at 2761.226 kb on - strand at 2761.279 kb on + strand at 2761.309 kb on + strand at 2761.319 kb on + strand at 2761.322 kb on + strand at 2761.324 kb on + strand at 2761.337 kb on - strand at 2761.345 kb on + strand, within CCNA_02613 at 2761.345 kb on + strand, within CCNA_02613 at 2761.345 kb on + strand, within CCNA_02613 at 2761.345 kb on + strand, within CCNA_02613 at 2761.345 kb on + strand, within CCNA_02613 at 2761.353 kb on - strand, within CCNA_02613 at 2761.353 kb on - strand, within CCNA_02613 at 2761.353 kb on - strand, within CCNA_02613 at 2761.353 kb on - strand, within CCNA_02613 at 2761.353 kb on - strand, within CCNA_02613 at 2761.389 kb on + strand, within CCNA_02613 at 2761.389 kb on + strand, within CCNA_02613 at 2761.389 kb on + strand, within CCNA_02613 at 2761.396 kb on + strand, within CCNA_02613 at 2761.396 kb on + strand, within CCNA_02613 at 2761.396 kb on + strand, within CCNA_02613 at 2761.404 kb on - strand, within CCNA_02613 at 2761.404 kb on - strand, within CCNA_02613 at 2761.404 kb on - strand, within CCNA_02613 at 2761.404 kb on - strand, within CCNA_02613 at 2761.404 kb on - strand, within CCNA_02613 at 2761.404 kb on - strand, within CCNA_02613 at 2761.431 kb on - strand, within CCNA_02613 at 2761.463 kb on + strand, within CCNA_02613 at 2761.505 kb on - strand, within CCNA_02613 at 2761.505 kb on - strand, within CCNA_02613 at 2761.512 kb on - strand, within CCNA_02613 at 2761.535 kb on + strand, within CCNA_02613 at 2761.535 kb on + strand, within CCNA_02613 at 2761.542 kb on + strand, within CCNA_02613 at 2761.598 kb on - strand, within CCNA_02613 at 2761.618 kb on + strand, within CCNA_02613 at 2761.627 kb on - strand, within CCNA_02613 at 2761.644 kb on + strand, within CCNA_02613 at 2761.647 kb on - strand at 2761.676 kb on - strand at 2761.677 kb on + strand at 2761.786 kb on - strand, within CCNA_02614 at 2761.793 kb on + strand, within CCNA_02614 at 2761.793 kb on + strand, within CCNA_02614 at 2761.801 kb on - strand, within CCNA_02614 at 2761.801 kb on - strand, within CCNA_02614 at 2761.801 kb on - strand, within CCNA_02614 at 2761.802 kb on + strand, within CCNA_02614 at 2761.810 kb on - strand, within CCNA_02614 at 2761.811 kb on + strand, within CCNA_02614 at 2761.812 kb on - strand, within CCNA_02614 at 2761.814 kb on + strand, within CCNA_02614 at 2761.828 kb on + strand, within CCNA_02614 at 2761.970 kb on + strand, within CCNA_02614 at 2761.976 kb on + strand, within CCNA_02614 at 2762.011 kb on - strand, within CCNA_02614 at 2762.011 kb on - strand, within CCNA_02614 at 2762.040 kb on - strand, within CCNA_02614 at 2762.049 kb on - strand, within CCNA_02614 at 2762.050 kb on - strand, within CCNA_02614 at 2762.089 kb on - strand, within CCNA_02614 at 2762.132 kb on + strand, within CCNA_02614 at 2762.140 kb on - strand, within CCNA_02614 at 2762.147 kb on - strand, within CCNA_02614 at 2762.147 kb on - strand, within CCNA_02614 at 2762.162 kb on - strand, within CCNA_02614 at 2762.166 kb on - strand, within CCNA_02614 at 2762.174 kb on + strand, within CCNA_02614 at 2762.181 kb on + strand, within CCNA_02614 at 2762.189 kb on + strand, within CCNA_02614 at 2762.218 kb on - strand, within CCNA_02614 at 2762.264 kb on - strand, within CCNA_02614 at 2762.354 kb on - strand, within CCNA_02614 at 2762.354 kb on - strand, within CCNA_02614 at 2762.365 kb on - strand, within CCNA_02614 at 2762.367 kb on + strand, within CCNA_02614 at 2762.394 kb on - strand, within CCNA_02614 at 2762.452 kb on - strand, within CCNA_02614 at 2762.479 kb on + strand, within CCNA_02614 at 2762.526 kb on + strand, within CCNA_02614 at 2762.664 kb on + strand at 2762.664 kb on + strand at 2762.672 kb on - strand at 2762.672 kb on - strand at 2762.680 kb on + strand at 2762.741 kb on - strand at 2762.762 kb on - strand at 2762.767 kb on - strand at 2762.795 kb on + strand at 2762.805 kb on + strand at 2762.808 kb on - strand at 2762.813 kb on - strand at 2762.860 kb on + strand at 2762.861 kb on - strand at 2762.861 kb on - strand at 2762.861 kb on - strand at 2762.861 kb on - strand at 2762.861 kb on - strand at 2762.861 kb on - strand at 2762.947 kb on + strand, within CCNA_02615 at 2762.983 kb on - strand, within CCNA_02615 at 2762.984 kb on + strand, within CCNA_02615 at 2762.984 kb on + strand, within CCNA_02615 at 2763.017 kb on - strand, within CCNA_02615 at 2763.077 kb on - strand, within CCNA_02615 at 2763.179 kb on + strand, within CCNA_02615 at 2763.179 kb on + strand, within CCNA_02615 at 2763.201 kb on + strand, within CCNA_02615 at 2763.201 kb on + strand, within CCNA_02615 at 2763.201 kb on + strand, within CCNA_02615 at 2763.201 kb on + strand, within CCNA_02615 at 2763.201 kb on + strand, within CCNA_02615 at 2763.201 kb on + strand, within CCNA_02615 at 2763.209 kb on - strand, within CCNA_02615 at 2763.209 kb on - strand, within CCNA_02615 at 2763.209 kb on - strand, within CCNA_02615 at 2763.209 kb on - strand, within CCNA_02615 at 2763.209 kb on - strand, within CCNA_02615 at 2763.224 kb on + strand, within CCNA_02615 at 2763.231 kb on - strand, within CCNA_02615 at 2763.231 kb on - strand, within CCNA_02615 at 2763.232 kb on - strand, within CCNA_02615 at 2763.233 kb on + strand, within CCNA_02615 at 2763.233 kb on + strand, within CCNA_02615 at 2763.233 kb on + strand, within CCNA_02615 at 2763.233 kb on + strand, within CCNA_02615 at 2763.233 kb on + strand, within CCNA_02615 at 2763.233 kb on + strand, within CCNA_02615 at 2763.241 kb on - strand, within CCNA_02615 at 2763.241 kb on - strand, within CCNA_02615 at 2763.241 kb on - strand, within CCNA_02615 at 2763.241 kb on - strand, within CCNA_02615 at 2763.241 kb on - strand, within CCNA_02615 at 2763.241 kb on - strand, within CCNA_02615 at 2763.241 kb on - strand, within CCNA_02615 at 2763.246 kb on - strand, within CCNA_02615 at 2763.264 kb on - strand, within CCNA_02615 at 2763.280 kb on - strand, within CCNA_02615 at 2763.280 kb on - strand, within CCNA_02615 at 2763.290 kb on + strand, within CCNA_02615 at 2763.322 kb on - strand, within CCNA_02615 at 2763.346 kb on - strand, within CCNA_02615 at 2763.423 kb on - strand, within CCNA_02615 at 2763.435 kb on + strand, within CCNA_02615 at 2763.435 kb on + strand, within CCNA_02615 at 2763.471 kb on - strand, within CCNA_02615 at 2763.473 kb on + strand, within CCNA_02615 at 2763.474 kb on + strand, within CCNA_02615 at 2763.501 kb on + strand, within CCNA_02615 at 2763.519 kb on + strand, within CCNA_02615 at 2763.529 kb on - strand, within CCNA_02615 at 2763.554 kb on + strand, within CCNA_02615 at 2763.567 kb on - strand, within CCNA_02615 at 2763.569 kb on + strand, within CCNA_02615 at 2763.580 kb on + strand, within CCNA_02615 at 2763.588 kb on - strand, within CCNA_02615 at 2763.644 kb on - strand, within CCNA_02615 at 2763.657 kb on + strand, within CCNA_02615
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,761,160 - -2.3 2,761,178 - +1.4 2,761,178 - +2.4 2,761,218 + -1.2 2,761,226 - +0.6 2,761,279 + -2.7 2,761,309 + +1.7 2,761,319 + -1.2 2,761,322 + -1.1 2,761,324 + +0.6 2,761,337 - +0.6 2,761,345 + CCNA_02613 0.11 +0.1 2,761,345 + CCNA_02613 0.11 +1.2 2,761,345 + CCNA_02613 0.11 +0.0 2,761,345 + CCNA_02613 0.11 +0.7 2,761,345 + CCNA_02613 0.11 -0.4 2,761,353 - CCNA_02613 0.13 +0.3 2,761,353 - CCNA_02613 0.13 +2.4 2,761,353 - CCNA_02613 0.13 +0.7 2,761,353 - CCNA_02613 0.13 +1.6 2,761,353 - CCNA_02613 0.13 -1.0 2,761,389 + CCNA_02613 0.23 -0.6 2,761,389 + CCNA_02613 0.23 -1.8 2,761,389 + CCNA_02613 0.23 -0.5 2,761,396 + CCNA_02613 0.25 -1.0 2,761,396 + CCNA_02613 0.25 +0.0 2,761,396 + CCNA_02613 0.25 +0.3 2,761,404 - CCNA_02613 0.27 +1.4 2,761,404 - CCNA_02613 0.27 +1.2 2,761,404 - CCNA_02613 0.27 -1.8 2,761,404 - CCNA_02613 0.27 +1.2 2,761,404 - CCNA_02613 0.27 -0.3 2,761,404 - CCNA_02613 0.27 -0.4 2,761,431 - CCNA_02613 0.34 +0.2 2,761,463 + CCNA_02613 0.42 +0.5 2,761,505 - CCNA_02613 0.53 +0.7 2,761,505 - CCNA_02613 0.53 +0.8 2,761,512 - CCNA_02613 0.55 +0.2 2,761,535 + CCNA_02613 0.61 +0.7 2,761,535 + CCNA_02613 0.61 -0.9 2,761,542 + CCNA_02613 0.63 -0.7 2,761,598 - CCNA_02613 0.78 +1.4 2,761,618 + CCNA_02613 0.83 -2.8 2,761,627 - CCNA_02613 0.85 +2.1 2,761,644 + CCNA_02613 0.90 +1.1 2,761,647 - +0.4 2,761,676 - +1.7 2,761,677 + -0.6 2,761,786 - CCNA_02614 0.11 +2.2 2,761,793 + CCNA_02614 0.11 -1.5 2,761,793 + CCNA_02614 0.11 +0.4 2,761,801 - CCNA_02614 0.12 +1.3 2,761,801 - CCNA_02614 0.12 +1.3 2,761,801 - CCNA_02614 0.12 -0.6 2,761,802 + CCNA_02614 0.12 -0.8 2,761,810 - CCNA_02614 0.13 +1.4 2,761,811 + CCNA_02614 0.13 +1.9 2,761,812 - CCNA_02614 0.13 -0.3 2,761,814 + CCNA_02614 0.13 +1.7 2,761,828 + CCNA_02614 0.15 +0.4 2,761,970 + CCNA_02614 0.29 -0.3 2,761,976 + CCNA_02614 0.29 +0.3 2,762,011 - CCNA_02614 0.33 +1.3 2,762,011 - CCNA_02614 0.33 +1.7 2,762,040 - CCNA_02614 0.36 +1.1 2,762,049 - CCNA_02614 0.37 +0.5 2,762,050 - CCNA_02614 0.37 +1.5 2,762,089 - CCNA_02614 0.41 +2.3 2,762,132 + CCNA_02614 0.45 -0.4 2,762,140 - CCNA_02614 0.46 +0.2 2,762,147 - CCNA_02614 0.46 +1.7 2,762,147 - CCNA_02614 0.46 +0.7 2,762,162 - CCNA_02614 0.48 +1.1 2,762,166 - CCNA_02614 0.48 +1.3 2,762,174 + CCNA_02614 0.49 -0.9 2,762,181 + CCNA_02614 0.50 -1.9 2,762,189 + CCNA_02614 0.51 +0.1 2,762,218 - CCNA_02614 0.53 +1.7 2,762,264 - CCNA_02614 0.58 +0.6 2,762,354 - CCNA_02614 0.67 +1.8 2,762,354 - CCNA_02614 0.67 +1.2 2,762,365 - CCNA_02614 0.68 +2.4 2,762,367 + CCNA_02614 0.68 +1.2 2,762,394 - CCNA_02614 0.71 +1.0 2,762,452 - CCNA_02614 0.77 +0.6 2,762,479 + CCNA_02614 0.79 -1.4 2,762,526 + CCNA_02614 0.84 +0.2 2,762,664 + -1.1 2,762,664 + +0.1 2,762,672 - +1.3 2,762,672 - +2.4 2,762,680 + -0.4 2,762,741 - +2.2 2,762,762 - +1.3 2,762,767 - +1.4 2,762,795 + -1.6 2,762,805 + +1.2 2,762,808 - +0.8 2,762,813 - +2.5 2,762,860 + -1.8 2,762,861 - +1.9 2,762,861 - +1.2 2,762,861 - +2.0 2,762,861 - +1.2 2,762,861 - +1.3 2,762,861 - +1.4 2,762,947 + CCNA_02615 0.11 -0.7 2,762,983 - CCNA_02615 0.14 +0.9 2,762,984 + CCNA_02615 0.14 +0.2 2,762,984 + CCNA_02615 0.14 +1.1 2,763,017 - CCNA_02615 0.17 -0.4 2,763,077 - CCNA_02615 0.22 +0.9 2,763,179 + CCNA_02615 0.29 -0.9 2,763,179 + CCNA_02615 0.29 -1.7 2,763,201 + CCNA_02615 0.31 -1.8 2,763,201 + CCNA_02615 0.31 -1.5 2,763,201 + CCNA_02615 0.31 -1.6 2,763,201 + CCNA_02615 0.31 -1.5 2,763,201 + CCNA_02615 0.31 +0.8 2,763,201 + CCNA_02615 0.31 -1.3 2,763,209 - CCNA_02615 0.32 +0.4 2,763,209 - CCNA_02615 0.32 +1.9 2,763,209 - CCNA_02615 0.32 +1.6 2,763,209 - CCNA_02615 0.32 +1.3 2,763,209 - CCNA_02615 0.32 +0.6 2,763,224 + CCNA_02615 0.33 -0.3 2,763,231 - CCNA_02615 0.34 +1.1 2,763,231 - CCNA_02615 0.34 +1.8 2,763,232 - CCNA_02615 0.34 +0.8 2,763,233 + CCNA_02615 0.34 -1.6 2,763,233 + CCNA_02615 0.34 -2.0 2,763,233 + CCNA_02615 0.34 -0.3 2,763,233 + CCNA_02615 0.34 +0.6 2,763,233 + CCNA_02615 0.34 -2.8 2,763,233 + CCNA_02615 0.34 -1.6 2,763,241 - CCNA_02615 0.34 +0.9 2,763,241 - CCNA_02615 0.34 +0.2 2,763,241 - CCNA_02615 0.34 +0.9 2,763,241 - CCNA_02615 0.34 +0.7 2,763,241 - CCNA_02615 0.34 +2.4 2,763,241 - CCNA_02615 0.34 +1.2 2,763,241 - CCNA_02615 0.34 +0.8 2,763,246 - CCNA_02615 0.35 +0.5 2,763,264 - CCNA_02615 0.36 +0.8 2,763,280 - CCNA_02615 0.37 +1.4 2,763,280 - CCNA_02615 0.37 +2.2 2,763,290 + CCNA_02615 0.38 -0.3 2,763,322 - CCNA_02615 0.41 +0.5 2,763,346 - CCNA_02615 0.43 +0.7 2,763,423 - CCNA_02615 0.49 +1.4 2,763,435 + CCNA_02615 0.50 +0.3 2,763,435 + CCNA_02615 0.50 +2.0 2,763,471 - CCNA_02615 0.52 +1.8 2,763,473 + CCNA_02615 0.53 +0.4 2,763,474 + CCNA_02615 0.53 +0.8 2,763,501 + CCNA_02615 0.55 +0.2 2,763,519 + CCNA_02615 0.56 -1.8 2,763,529 - CCNA_02615 0.57 +0.6 2,763,554 + CCNA_02615 0.59 -2.4 2,763,567 - CCNA_02615 0.60 +1.5 2,763,569 + CCNA_02615 0.60 -2.5 2,763,580 + CCNA_02615 0.61 -1.4 2,763,588 - CCNA_02615 0.62 +1.0 2,763,644 - CCNA_02615 0.66 +1.1 2,763,657 + CCNA_02615 0.67 -1.8
Or see this region's nucleotide sequence