Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17510

Experiment: R2A with perchlorate 6.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS17500 and CA265_RS17505 are separated by 32 nucleotidesCA265_RS17505 and CA265_RS17510 are separated by 339 nucleotidesCA265_RS17510 and CA265_RS17515 are separated by 236 nucleotides CA265_RS17500: CA265_RS17500 - hypothetical protein, at 4,363,285 to 4,364,130 _RS17500 CA265_RS17505: CA265_RS17505 - hypothetical protein, at 4,364,163 to 4,364,567 _RS17505 CA265_RS17510: CA265_RS17510 - diadenosine tetraphosphate hydrolase, at 4,364,907 to 4,365,425 _RS17510 CA265_RS17515: CA265_RS17515 - hypothetical protein, at 4,365,662 to 4,366,342 _RS17515 Position (kb) 4364 4365 4366Strain fitness (log2 ratio) -2 -1 0 1at 4364.731 kb on - strandat 4364.808 kb on + strandat 4364.808 kb on + strandat 4364.812 kb on + strandat 4364.813 kb on - strandat 4364.813 kb on - strandat 4364.842 kb on + strandat 4364.926 kb on + strandat 4364.926 kb on + strandat 4365.023 kb on - strand, within CA265_RS17510at 4365.025 kb on + strand, within CA265_RS17510at 4365.025 kb on + strand, within CA265_RS17510at 4365.107 kb on + strand, within CA265_RS17510at 4365.119 kb on - strand, within CA265_RS17510at 4365.119 kb on - strand, within CA265_RS17510at 4365.122 kb on + strand, within CA265_RS17510at 4365.209 kb on - strand, within CA265_RS17510at 4365.215 kb on - strand, within CA265_RS17510at 4365.220 kb on + strand, within CA265_RS17510at 4365.240 kb on - strand, within CA265_RS17510at 4365.323 kb on + strand, within CA265_RS17510at 4365.396 kb on + strandat 4365.397 kb on - strandat 4365.434 kb on + strandat 4365.544 kb on - strandat 4365.553 kb on + strandat 4365.553 kb on + strandat 4365.554 kb on - strandat 4365.632 kb on + strandat 4365.658 kb on + strandat 4365.762 kb on + strand, within CA265_RS17515at 4365.794 kb on - strand, within CA265_RS17515at 4365.859 kb on - strand, within CA265_RS17515at 4365.925 kb on + strand, within CA265_RS17515at 4365.968 kb on + strand, within CA265_RS17515at 4365.968 kb on + strand, within CA265_RS17515at 4365.969 kb on - strand, within CA265_RS17515at 4365.973 kb on + strand, within CA265_RS17515at 4365.973 kb on + strand, within CA265_RS17515at 4365.974 kb on - strand, within CA265_RS17515at 4366.009 kb on + strand, within CA265_RS17515at 4366.009 kb on + strand, within CA265_RS17515at 4366.168 kb on + strand, within CA265_RS17515at 4366.177 kb on + strand, within CA265_RS17515at 4366.233 kb on - strand, within CA265_RS17515at 4366.324 kb on + strandat 4366.423 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with perchlorate 6.25 mM
remove
4,364,731 - -1.1
4,364,808 + -0.5
4,364,808 + -0.7
4,364,812 + -0.0
4,364,813 - -1.0
4,364,813 - -0.3
4,364,842 + +0.4
4,364,926 + +0.1
4,364,926 + -1.3
4,365,023 - CA265_RS17510 0.22 +0.1
4,365,025 + CA265_RS17510 0.23 -2.4
4,365,025 + CA265_RS17510 0.23 -0.2
4,365,107 + CA265_RS17510 0.39 -1.5
4,365,119 - CA265_RS17510 0.41 -0.7
4,365,119 - CA265_RS17510 0.41 -0.1
4,365,122 + CA265_RS17510 0.41 -1.1
4,365,209 - CA265_RS17510 0.58 -0.4
4,365,215 - CA265_RS17510 0.59 -0.1
4,365,220 + CA265_RS17510 0.60 -0.6
4,365,240 - CA265_RS17510 0.64 +0.1
4,365,323 + CA265_RS17510 0.80 -1.7
4,365,396 + +0.9
4,365,397 - -0.3
4,365,434 + -0.3
4,365,544 - -0.3
4,365,553 + -0.9
4,365,553 + -0.8
4,365,554 - -0.9
4,365,632 + -0.8
4,365,658 + -0.7
4,365,762 + CA265_RS17515 0.15 -0.4
4,365,794 - CA265_RS17515 0.19 +0.1
4,365,859 - CA265_RS17515 0.29 -2.1
4,365,925 + CA265_RS17515 0.39 +0.7
4,365,968 + CA265_RS17515 0.45 -1.0
4,365,968 + CA265_RS17515 0.45 -0.9
4,365,969 - CA265_RS17515 0.45 +0.5
4,365,973 + CA265_RS17515 0.46 +0.1
4,365,973 + CA265_RS17515 0.46 +0.1
4,365,974 - CA265_RS17515 0.46 -0.1
4,366,009 + CA265_RS17515 0.51 -0.5
4,366,009 + CA265_RS17515 0.51 +0.5
4,366,168 + CA265_RS17515 0.74 -0.6
4,366,177 + CA265_RS17515 0.76 -0.6
4,366,233 - CA265_RS17515 0.84 -0.5
4,366,324 + -0.3
4,366,423 + +0.3

Or see this region's nucleotide sequence