Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14895

Experiment: R2A with perchlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS14890 and CA265_RS14895 are separated by 548 nucleotidesCA265_RS14895 and CA265_RS14900 are separated by 515 nucleotides CA265_RS14890: CA265_RS14890 - Clp protease ClpC, at 3,752,438 to 3,754,990 _RS14890 CA265_RS14895: CA265_RS14895 - hypothetical protein, at 3,755,539 to 3,756,036 _RS14895 CA265_RS14900: CA265_RS14900 - hypothetical protein, at 3,756,552 to 3,759,476 _RS14900 Position (kb) 3755 3756 3757Strain fitness (log2 ratio) -2 -1 0 1at 3754.994 kb on - strandat 3755.010 kb on - strandat 3755.176 kb on + strandat 3755.190 kb on + strandat 3755.192 kb on + strandat 3755.258 kb on - strandat 3755.300 kb on + strandat 3755.404 kb on + strandat 3755.404 kb on + strandat 3755.405 kb on - strandat 3755.418 kb on + strandat 3755.432 kb on + strandat 3755.481 kb on + strandat 3755.487 kb on - strandat 3755.546 kb on + strandat 3755.712 kb on + strand, within CA265_RS14895at 3755.745 kb on + strand, within CA265_RS14895at 3755.789 kb on - strand, within CA265_RS14895at 3755.850 kb on + strand, within CA265_RS14895at 3755.850 kb on + strand, within CA265_RS14895at 3755.856 kb on + strand, within CA265_RS14895at 3755.885 kb on + strand, within CA265_RS14895at 3755.885 kb on + strand, within CA265_RS14895at 3755.886 kb on - strand, within CA265_RS14895at 3755.887 kb on + strand, within CA265_RS14895at 3755.887 kb on + strand, within CA265_RS14895at 3755.890 kb on + strand, within CA265_RS14895at 3755.964 kb on + strand, within CA265_RS14895at 3756.014 kb on - strandat 3756.081 kb on + strandat 3756.081 kb on + strandat 3756.084 kb on + strandat 3756.092 kb on + strandat 3756.092 kb on + strandat 3756.206 kb on + strandat 3756.207 kb on - strandat 3756.291 kb on - strandat 3756.299 kb on + strandat 3756.339 kb on - strandat 3756.342 kb on + strandat 3756.417 kb on - strandat 3756.425 kb on - strandat 3756.425 kb on - strandat 3756.433 kb on - strandat 3756.435 kb on + strandat 3756.454 kb on - strandat 3756.458 kb on + strandat 3756.528 kb on + strandat 3756.529 kb on - strandat 3756.539 kb on + strandat 3756.590 kb on + strandat 3756.723 kb on + strandat 3756.723 kb on + strandat 3756.723 kb on + strandat 3756.726 kb on - strandat 3756.807 kb on - strandat 3756.815 kb on - strandat 3756.826 kb on + strandat 3756.870 kb on + strand, within CA265_RS14900at 3756.871 kb on - strand, within CA265_RS14900at 3756.940 kb on + strand, within CA265_RS14900

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with perchlorate 6.25 mM
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3,754,994 - +0.4
3,755,010 - +0.3
3,755,176 + -0.1
3,755,190 + -0.6
3,755,192 + -0.4
3,755,258 - -2.5
3,755,300 + +0.2
3,755,404 + -0.3
3,755,404 + -0.8
3,755,405 - -1.7
3,755,418 + -0.5
3,755,432 + -0.7
3,755,481 + -0.8
3,755,487 - +0.4
3,755,546 + +0.4
3,755,712 + CA265_RS14895 0.35 -0.5
3,755,745 + CA265_RS14895 0.41 -0.5
3,755,789 - CA265_RS14895 0.50 +0.3
3,755,850 + CA265_RS14895 0.62 -0.3
3,755,850 + CA265_RS14895 0.62 -0.5
3,755,856 + CA265_RS14895 0.64 -0.8
3,755,885 + CA265_RS14895 0.69 -1.3
3,755,885 + CA265_RS14895 0.69 -0.3
3,755,886 - CA265_RS14895 0.70 -1.0
3,755,887 + CA265_RS14895 0.70 +1.5
3,755,887 + CA265_RS14895 0.70 -0.6
3,755,890 + CA265_RS14895 0.70 -1.1
3,755,964 + CA265_RS14895 0.85 -0.8
3,756,014 - -0.5
3,756,081 + -0.1
3,756,081 + -0.5
3,756,084 + -0.7
3,756,092 + +0.2
3,756,092 + -0.3
3,756,206 + +0.6
3,756,207 - +1.0
3,756,291 - -0.6
3,756,299 + +0.9
3,756,339 - -0.1
3,756,342 + -0.4
3,756,417 - -0.3
3,756,425 - -0.3
3,756,425 - +0.4
3,756,433 - -0.1
3,756,435 + -0.4
3,756,454 - -0.4
3,756,458 + +0.3
3,756,528 + +0.3
3,756,529 - -0.9
3,756,539 + +0.2
3,756,590 + -0.9
3,756,723 + +1.5
3,756,723 + +1.1
3,756,723 + -0.2
3,756,726 - +0.7
3,756,807 - -1.0
3,756,815 - -0.6
3,756,826 + -0.1
3,756,870 + CA265_RS14900 0.11 +0.1
3,756,871 - CA265_RS14900 0.11 -0.2
3,756,940 + CA265_RS14900 0.13 +0.3

Or see this region's nucleotide sequence