Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14535

Experiment: R2A with perchlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS14530 and CA265_RS14535 are separated by 138 nucleotidesCA265_RS14535 and CA265_RS14540 are separated by 173 nucleotides CA265_RS14530: CA265_RS14530 - nicotinate-nucleotide diphosphorylase (carboxylating), at 3,660,836 to 3,661,678 _RS14530 CA265_RS14535: CA265_RS14535 - DUF4783 domain-containing protein, at 3,661,817 to 3,662,215 _RS14535 CA265_RS14540: CA265_RS14540 - phosphoglycerate mutase (2,3-diphosphoglycerate-independent), at 3,662,389 to 3,663,912 _RS14540 Position (kb) 3661 3662 3663Strain fitness (log2 ratio) -2 -1 0 1 2at 3660.838 kb on - strandat 3660.905 kb on + strandat 3660.922 kb on - strand, within CA265_RS14530at 3660.934 kb on - strand, within CA265_RS14530at 3661.031 kb on - strandat 3661.345 kb on + strand, within CA265_RS14530at 3661.414 kb on + strand, within CA265_RS14530at 3661.475 kb on + strand, within CA265_RS14530at 3661.691 kb on - strandat 3661.718 kb on - strandat 3661.730 kb on - strandat 3661.753 kb on - strandat 3661.757 kb on + strandat 3661.757 kb on + strandat 3661.759 kb on + strandat 3661.913 kb on - strand, within CA265_RS14535at 3662.170 kb on - strand, within CA265_RS14535at 3662.171 kb on + strand, within CA265_RS14535at 3662.171 kb on + strand, within CA265_RS14535at 3662.186 kb on - strandat 3662.202 kb on - strandat 3662.239 kb on - strandat 3662.245 kb on - strandat 3662.307 kb on + strandat 3662.318 kb on + strandat 3662.318 kb on + strandat 3662.344 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with perchlorate 6.25 mM
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3,660,838 - -0.5
3,660,905 + +2.5
3,660,922 - CA265_RS14530 0.10 -0.8
3,660,934 - CA265_RS14530 0.12 +0.7
3,661,031 - -0.1
3,661,345 + CA265_RS14530 0.60 -2.3
3,661,414 + CA265_RS14530 0.69 -0.4
3,661,475 + CA265_RS14530 0.76 -2.5
3,661,691 - -1.2
3,661,718 - -1.1
3,661,730 - -1.1
3,661,753 - -0.5
3,661,757 + -0.3
3,661,757 + -0.2
3,661,759 + +1.5
3,661,913 - CA265_RS14535 0.24 -0.7
3,662,170 - CA265_RS14535 0.88 -0.9
3,662,171 + CA265_RS14535 0.89 -0.4
3,662,171 + CA265_RS14535 0.89 -0.6
3,662,186 - +0.1
3,662,202 - -0.5
3,662,239 - -0.1
3,662,245 - -1.4
3,662,307 + -0.8
3,662,318 + +0.3
3,662,318 + +0.9
3,662,344 + +0.4

Or see this region's nucleotide sequence