Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10955

Experiment: R2A with perchlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS10950 and CA265_RS10955 are separated by 370 nucleotidesCA265_RS10955 and CA265_RS10960 overlap by 17 nucleotidesCA265_RS10960 and CA265_RS10965 are separated by 67 nucleotidesCA265_RS10965 and CA265_RS10970 are separated by 331 nucleotides CA265_RS10950: CA265_RS10950 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 2,694,579 to 2,695,274 _RS10950 CA265_RS10955: CA265_RS10955 - membrane protein insertion efficiency factor YidD, at 2,695,645 to 2,695,875 _RS10955 CA265_RS10960: CA265_RS10960 - ribonuclease P protein component, at 2,695,859 to 2,696,257 _RS10960 CA265_RS10965: CA265_RS10965 - 50S ribosomal protein L34, at 2,696,325 to 2,696,483 _RS10965 CA265_RS10970: CA265_RS10970 - hypothetical protein, at 2,696,815 to 2,697,150 _RS10970 Position (kb) 2695 2696Strain fitness (log2 ratio) -2 -1 0 1at 2695.286 kb on - strandat 2695.289 kb on - strandat 2695.289 kb on - strandat 2695.460 kb on - strandat 2695.485 kb on - strandat 2695.517 kb on + strandat 2695.543 kb on + strandat 2695.543 kb on + strandat 2695.593 kb on + strandat 2695.633 kb on + strandat 2695.637 kb on - strandat 2695.637 kb on - strandat 2695.722 kb on + strand, within CA265_RS10955at 2695.820 kb on + strand, within CA265_RS10955at 2695.823 kb on - strand, within CA265_RS10955at 2695.827 kb on + strand, within CA265_RS10955at 2696.258 kb on - strandat 2696.626 kb on + strandat 2696.669 kb on - strandat 2696.671 kb on + strandat 2696.671 kb on + strandat 2696.675 kb on + strandat 2696.675 kb on + strandat 2696.698 kb on - strandat 2696.797 kb on - strandat 2696.799 kb on + strandat 2696.841 kb on + strandat 2696.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with perchlorate 6.25 mM
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2,695,286 - -0.3
2,695,289 - -0.0
2,695,289 - -0.7
2,695,460 - +0.7
2,695,485 - -0.5
2,695,517 + -0.1
2,695,543 + -0.0
2,695,543 + +0.7
2,695,593 + -1.1
2,695,633 + +0.1
2,695,637 - -0.3
2,695,637 - +0.2
2,695,722 + CA265_RS10955 0.33 -1.0
2,695,820 + CA265_RS10955 0.76 -0.4
2,695,823 - CA265_RS10955 0.77 -1.8
2,695,827 + CA265_RS10955 0.79 -2.0
2,696,258 - -0.4
2,696,626 + -0.2
2,696,669 - +0.6
2,696,671 + +0.2
2,696,671 + -0.2
2,696,675 + +0.3
2,696,675 + +0.3
2,696,698 - -0.4
2,696,797 - -0.4
2,696,799 + -0.2
2,696,841 + -0.1
2,696,842 - +0.1

Or see this region's nucleotide sequence