Experiment: R2A with perchlorate 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00020 and CA265_RS00025 are separated by 3 nucleotides CA265_RS00025 and CA265_RS00030 are separated by 82 nucleotides CA265_RS00030 and CA265_RS00035 are separated by 483 nucleotides
CA265_RS00020: CA265_RS00020 - methanol dehydrogenase, at 2,628 to 3,401
_RS00020
CA265_RS00025: CA265_RS00025 - hypothetical protein, at 3,405 to 3,848
_RS00025
CA265_RS00030: CA265_RS00030 - LemA family protein, at 3,931 to 4,512
_RS00030
CA265_RS00035: CA265_RS00035 - FAD-binding protein, at 4,996 to 6,537
_RS00035
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1 at 3.008 kb on + strand, within CA265_RS00020 at 3.009 kb on - strand, within CA265_RS00020 at 3.041 kb on + strand, within CA265_RS00020 at 3.042 kb on - strand, within CA265_RS00020 at 3.117 kb on - strand, within CA265_RS00020 at 3.175 kb on + strand, within CA265_RS00020 at 3.185 kb on + strand, within CA265_RS00020 at 3.185 kb on + strand, within CA265_RS00020 at 3.260 kb on + strand, within CA265_RS00020 at 3.260 kb on + strand, within CA265_RS00020 at 3.291 kb on + strand, within CA265_RS00020 at 3.294 kb on + strand, within CA265_RS00020 at 3.294 kb on + strand, within CA265_RS00020 at 3.299 kb on + strand, within CA265_RS00020 at 3.364 kb on - strand at 3.406 kb on + strand at 3.407 kb on - strand at 3.417 kb on + strand at 3.418 kb on - strand at 3.418 kb on - strand at 3.572 kb on + strand, within CA265_RS00025 at 3.572 kb on + strand, within CA265_RS00025 at 3.597 kb on + strand, within CA265_RS00025 at 3.758 kb on + strand, within CA265_RS00025 at 3.759 kb on - strand, within CA265_RS00025 at 3.767 kb on + strand, within CA265_RS00025 at 3.848 kb on + strand at 3.848 kb on + strand at 3.848 kb on + strand at 3.849 kb on - strand at 3.854 kb on + strand at 3.854 kb on + strand at 3.857 kb on + strand at 3.858 kb on - strand at 3.858 kb on - strand at 3.861 kb on + strand at 3.880 kb on + strand at 3.881 kb on - strand at 3.891 kb on + strand at 3.892 kb on - strand at 3.912 kb on - strand at 3.913 kb on + strand at 3.914 kb on - strand at 3.914 kb on - strand at 3.914 kb on - strand at 3.914 kb on - strand at 3.987 kb on + strand at 3.988 kb on - strand at 4.111 kb on + strand, within CA265_RS00030 at 4.150 kb on + strand, within CA265_RS00030 at 4.180 kb on + strand, within CA265_RS00030 at 4.306 kb on + strand, within CA265_RS00030 at 4.340 kb on - strand, within CA265_RS00030 at 4.440 kb on + strand, within CA265_RS00030 at 4.441 kb on - strand, within CA265_RS00030 at 4.476 kb on + strand at 4.477 kb on - strand at 4.477 kb on - strand at 4.502 kb on - strand at 4.547 kb on + strand at 4.566 kb on - strand at 4.769 kb on + strand at 4.770 kb on - strand at 4.772 kb on + strand at 4.834 kb on - strand at 4.926 kb on - strand at 4.944 kb on - strand at 4.959 kb on + strand at 4.959 kb on + strand at 4.968 kb on - strand at 4.979 kb on + strand at 5.204 kb on + strand, within CA265_RS00035 at 5.206 kb on + strand, within CA265_RS00035 at 5.214 kb on + strand, within CA265_RS00035 at 5.214 kb on + strand, within CA265_RS00035 at 5.247 kb on - strand, within CA265_RS00035 at 5.253 kb on - strand, within CA265_RS00035 at 5.300 kb on - strand, within CA265_RS00035 at 5.342 kb on + strand, within CA265_RS00035 at 5.342 kb on + strand, within CA265_RS00035 at 5.408 kb on - strand, within CA265_RS00035 at 5.484 kb on + strand, within CA265_RS00035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with perchlorate 6.25 mM remove 3,008 + CA265_RS00020 0.49 +0.0 3,009 - CA265_RS00020 0.49 +0.6 3,041 + CA265_RS00020 0.53 -0.2 3,042 - CA265_RS00020 0.53 +0.4 3,117 - CA265_RS00020 0.63 -1.6 3,175 + CA265_RS00020 0.71 +0.0 3,185 + CA265_RS00020 0.72 +0.6 3,185 + CA265_RS00020 0.72 -0.6 3,260 + CA265_RS00020 0.82 -0.9 3,260 + CA265_RS00020 0.82 +0.6 3,291 + CA265_RS00020 0.86 +0.2 3,294 + CA265_RS00020 0.86 +0.1 3,294 + CA265_RS00020 0.86 +0.4 3,299 + CA265_RS00020 0.87 -0.2 3,364 - -0.7 3,406 + +1.1 3,407 - -0.5 3,417 + +0.4 3,418 - -0.9 3,418 - -0.6 3,572 + CA265_RS00025 0.38 +0.6 3,572 + CA265_RS00025 0.38 +0.8 3,597 + CA265_RS00025 0.43 -0.2 3,758 + CA265_RS00025 0.80 +0.2 3,759 - CA265_RS00025 0.80 -0.6 3,767 + CA265_RS00025 0.82 +0.6 3,848 + -0.4 3,848 + -0.4 3,848 + -1.4 3,849 - -1.7 3,854 + -0.3 3,854 + -1.2 3,857 + +0.4 3,858 - -0.1 3,858 - +0.4 3,861 + +1.1 3,880 + +0.1 3,881 - -1.4 3,891 + +0.2 3,892 - +0.6 3,912 - -0.2 3,913 + +0.2 3,914 - +0.4 3,914 - -0.2 3,914 - -0.6 3,914 - -0.0 3,987 + -0.0 3,988 - -1.3 4,111 + CA265_RS00030 0.31 -0.8 4,150 + CA265_RS00030 0.38 +0.5 4,180 + CA265_RS00030 0.43 +1.6 4,306 + CA265_RS00030 0.64 -1.0 4,340 - CA265_RS00030 0.70 -1.3 4,440 + CA265_RS00030 0.87 -1.1 4,441 - CA265_RS00030 0.88 -0.7 4,476 + -1.2 4,477 - -1.3 4,477 - +1.2 4,502 - -0.0 4,547 + +0.4 4,566 - +0.2 4,769 + -1.9 4,770 - -0.6 4,772 + -0.8 4,834 - +0.2 4,926 - -2.6 4,944 - +0.2 4,959 + -0.7 4,959 + -0.4 4,968 - -0.6 4,979 + +1.4 5,204 + CA265_RS00035 0.13 +1.6 5,206 + CA265_RS00035 0.14 +0.2 5,214 + CA265_RS00035 0.14 -0.3 5,214 + CA265_RS00035 0.14 +0.4 5,247 - CA265_RS00035 0.16 -0.4 5,253 - CA265_RS00035 0.17 -0.3 5,300 - CA265_RS00035 0.20 -0.1 5,342 + CA265_RS00035 0.22 +0.3 5,342 + CA265_RS00035 0.22 -0.0 5,408 - CA265_RS00035 0.27 -0.1 5,484 + CA265_RS00035 0.32 +0.9
Or see this region's nucleotide sequence