Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09620

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09615 and AO353_09620 overlap by 8 nucleotidesAO353_09620 and AO353_09625 are separated by 108 nucleotides AO353_09615: AO353_09615 - type VI secretion protein, at 2,108,776 to 2,109,828 _09615 AO353_09620: AO353_09620 - ClpV1 family T6SS ATPase, at 2,109,821 to 2,112,499 _09620 AO353_09625: AO353_09625 - type VI secretion protein ImpA, at 2,112,608 to 2,114,548 _09625 Position (kb) 2109 2110 2111 2112 2113Strain fitness (log2 ratio) -2 -1 0 1 2at 2108.848 kb on + strandat 2108.848 kb on + strandat 2108.848 kb on + strandat 2108.848 kb on + strandat 2108.849 kb on - strandat 2108.849 kb on - strandat 2108.849 kb on - strandat 2108.994 kb on - strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.088 kb on + strand, within AO353_09615at 2109.089 kb on - strand, within AO353_09615at 2109.089 kb on - strand, within AO353_09615at 2109.089 kb on - strand, within AO353_09615at 2109.089 kb on - strand, within AO353_09615at 2109.089 kb on - strand, within AO353_09615at 2109.089 kb on - strand, within AO353_09615at 2109.089 kb on - strand, within AO353_09615at 2109.089 kb on - strand, within AO353_09615at 2109.175 kb on + strand, within AO353_09615at 2109.175 kb on + strand, within AO353_09615at 2109.232 kb on + strand, within AO353_09615at 2109.323 kb on - strand, within AO353_09615at 2109.353 kb on - strand, within AO353_09615at 2109.376 kb on - strand, within AO353_09615at 2109.376 kb on - strand, within AO353_09615at 2109.385 kb on + strand, within AO353_09615at 2109.385 kb on + strand, within AO353_09615at 2109.386 kb on - strand, within AO353_09615at 2109.386 kb on - strand, within AO353_09615at 2109.415 kb on + strand, within AO353_09615at 2109.415 kb on + strand, within AO353_09615at 2109.415 kb on + strand, within AO353_09615at 2109.415 kb on + strand, within AO353_09615at 2109.415 kb on + strand, within AO353_09615at 2109.415 kb on + strand, within AO353_09615at 2109.416 kb on - strand, within AO353_09615at 2109.416 kb on - strand, within AO353_09615at 2109.503 kb on - strand, within AO353_09615at 2109.503 kb on - strand, within AO353_09615at 2109.503 kb on - strand, within AO353_09615at 2109.562 kb on + strand, within AO353_09615at 2109.562 kb on + strand, within AO353_09615at 2109.562 kb on + strand, within AO353_09615at 2109.562 kb on + strand, within AO353_09615at 2109.562 kb on + strand, within AO353_09615at 2109.562 kb on + strand, within AO353_09615at 2109.562 kb on + strand, within AO353_09615at 2109.562 kb on + strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.563 kb on - strand, within AO353_09615at 2109.623 kb on - strand, within AO353_09615at 2109.623 kb on - strand, within AO353_09615at 2109.677 kb on + strand, within AO353_09615at 2109.720 kb on + strand, within AO353_09615at 2109.720 kb on + strand, within AO353_09615at 2109.720 kb on + strand, within AO353_09615at 2109.720 kb on + strand, within AO353_09615at 2109.721 kb on - strand, within AO353_09615at 2109.758 kb on + strandat 2109.758 kb on + strandat 2109.758 kb on + strandat 2109.758 kb on + strandat 2109.759 kb on - strandat 2109.759 kb on - strandat 2109.759 kb on - strandat 2109.759 kb on - strandat 2109.761 kb on + strandat 2109.762 kb on - strandat 2109.775 kb on + strandat 2109.776 kb on - strandat 2109.858 kb on + strandat 2109.859 kb on - strandat 2109.859 kb on - strandat 2109.872 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.923 kb on + strandat 2109.924 kb on - strandat 2109.924 kb on - strandat 2109.924 kb on - strandat 2109.924 kb on - strandat 2109.924 kb on - strandat 2109.924 kb on - strandat 2110.125 kb on - strand, within AO353_09620at 2110.125 kb on - strand, within AO353_09620at 2110.277 kb on + strand, within AO353_09620at 2110.277 kb on + strand, within AO353_09620at 2110.277 kb on + strand, within AO353_09620at 2110.277 kb on + strand, within AO353_09620at 2110.277 kb on + strand, within AO353_09620at 2110.277 kb on + strand, within AO353_09620at 2110.277 kb on + strand, within AO353_09620at 2110.278 kb on - strand, within AO353_09620at 2110.278 kb on - strand, within AO353_09620at 2110.278 kb on - strand, within AO353_09620at 2110.278 kb on - strand, within AO353_09620at 2110.278 kb on - strand, within AO353_09620at 2110.278 kb on - strand, within AO353_09620at 2110.278 kb on - strand, within AO353_09620at 2110.278 kb on - strand, within AO353_09620at 2110.406 kb on - strand, within AO353_09620at 2110.547 kb on - strand, within AO353_09620at 2110.742 kb on - strand, within AO353_09620at 2110.764 kb on + strand, within AO353_09620at 2110.765 kb on - strand, within AO353_09620at 2110.765 kb on - strand, within AO353_09620at 2110.765 kb on - strand, within AO353_09620at 2110.765 kb on - strand, within AO353_09620at 2110.868 kb on + strand, within AO353_09620at 2110.868 kb on + strand, within AO353_09620at 2110.869 kb on - strand, within AO353_09620at 2110.869 kb on - strand, within AO353_09620at 2111.051 kb on + strand, within AO353_09620at 2111.052 kb on - strand, within AO353_09620at 2111.325 kb on + strand, within AO353_09620at 2111.325 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.602 kb on + strand, within AO353_09620at 2111.603 kb on - strand, within AO353_09620at 2111.603 kb on - strand, within AO353_09620at 2111.603 kb on - strand, within AO353_09620at 2111.603 kb on - strand, within AO353_09620at 2111.603 kb on - strand, within AO353_09620at 2111.603 kb on - strand, within AO353_09620at 2111.762 kb on + strand, within AO353_09620at 2111.762 kb on + strand, within AO353_09620at 2111.763 kb on - strand, within AO353_09620at 2111.763 kb on - strand, within AO353_09620at 2111.763 kb on - strand, within AO353_09620at 2111.763 kb on - strand, within AO353_09620at 2111.763 kb on - strand, within AO353_09620at 2111.852 kb on + strand, within AO353_09620at 2111.877 kb on + strand, within AO353_09620at 2111.877 kb on + strand, within AO353_09620at 2111.878 kb on - strand, within AO353_09620at 2111.906 kb on + strand, within AO353_09620at 2111.907 kb on - strand, within AO353_09620at 2112.191 kb on + strand, within AO353_09620at 2112.192 kb on - strand, within AO353_09620at 2112.194 kb on + strand, within AO353_09620at 2112.291 kb on - strandat 2112.384 kb on + strandat 2112.477 kb on - strandat 2112.497 kb on + strandat 2112.497 kb on + strandat 2112.498 kb on - strandat 2112.587 kb on - strandat 2112.587 kb on - strandat 2112.587 kb on - strandat 2112.587 kb on - strandat 2112.603 kb on + strandat 2112.603 kb on + strandat 2112.612 kb on + strandat 2112.612 kb on + strandat 2112.612 kb on + strandat 2112.612 kb on + strandat 2112.612 kb on + strandat 2112.612 kb on + strandat 2112.612 kb on + strandat 2112.613 kb on - strandat 2112.613 kb on - strandat 2112.613 kb on - strandat 2112.613 kb on - strandat 2112.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,108,848 + -0.1
2,108,848 + +0.0
2,108,848 + -0.8
2,108,848 + -0.2
2,108,849 - +0.1
2,108,849 - +0.2
2,108,849 - +0.6
2,108,994 - AO353_09615 0.21 -0.8
2,109,088 + AO353_09615 0.30 -0.2
2,109,088 + AO353_09615 0.30 -0.6
2,109,088 + AO353_09615 0.30 -0.4
2,109,088 + AO353_09615 0.30 +0.0
2,109,088 + AO353_09615 0.30 +0.1
2,109,088 + AO353_09615 0.30 -0.8
2,109,088 + AO353_09615 0.30 +0.0
2,109,088 + AO353_09615 0.30 +1.1
2,109,088 + AO353_09615 0.30 -1.6
2,109,088 + AO353_09615 0.30 -0.4
2,109,088 + AO353_09615 0.30 -0.3
2,109,089 - AO353_09615 0.30 +0.5
2,109,089 - AO353_09615 0.30 +0.0
2,109,089 - AO353_09615 0.30 -0.2
2,109,089 - AO353_09615 0.30 -1.5
2,109,089 - AO353_09615 0.30 +0.9
2,109,089 - AO353_09615 0.30 -0.1
2,109,089 - AO353_09615 0.30 +0.2
2,109,089 - AO353_09615 0.30 -0.4
2,109,175 + AO353_09615 0.38 +0.3
2,109,175 + AO353_09615 0.38 +0.1
2,109,232 + AO353_09615 0.43 -0.1
2,109,323 - AO353_09615 0.52 -1.6
2,109,353 - AO353_09615 0.55 -0.3
2,109,376 - AO353_09615 0.57 -1.7
2,109,376 - AO353_09615 0.57 +0.8
2,109,385 + AO353_09615 0.58 +0.7
2,109,385 + AO353_09615 0.58 +0.2
2,109,386 - AO353_09615 0.58 +0.1
2,109,386 - AO353_09615 0.58 -1.4
2,109,415 + AO353_09615 0.61 -2.0
2,109,415 + AO353_09615 0.61 +0.0
2,109,415 + AO353_09615 0.61 -1.6
2,109,415 + AO353_09615 0.61 -1.0
2,109,415 + AO353_09615 0.61 -1.0
2,109,415 + AO353_09615 0.61 +0.8
2,109,416 - AO353_09615 0.61 -1.7
2,109,416 - AO353_09615 0.61 +0.7
2,109,503 - AO353_09615 0.69 +0.3
2,109,503 - AO353_09615 0.69 -0.8
2,109,503 - AO353_09615 0.69 -0.6
2,109,562 + AO353_09615 0.75 -2.2
2,109,562 + AO353_09615 0.75 -0.2
2,109,562 + AO353_09615 0.75 -2.3
2,109,562 + AO353_09615 0.75 -0.9
2,109,562 + AO353_09615 0.75 +0.8
2,109,562 + AO353_09615 0.75 -0.3
2,109,562 + AO353_09615 0.75 +0.9
2,109,562 + AO353_09615 0.75 -1.8
2,109,563 - AO353_09615 0.75 -0.3
2,109,563 - AO353_09615 0.75 +0.1
2,109,563 - AO353_09615 0.75 +0.9
2,109,563 - AO353_09615 0.75 -0.3
2,109,563 - AO353_09615 0.75 +0.8
2,109,563 - AO353_09615 0.75 +0.7
2,109,563 - AO353_09615 0.75 -0.2
2,109,563 - AO353_09615 0.75 +1.4
2,109,563 - AO353_09615 0.75 -0.1
2,109,563 - AO353_09615 0.75 -0.8
2,109,563 - AO353_09615 0.75 -0.8
2,109,563 - AO353_09615 0.75 +0.0
2,109,563 - AO353_09615 0.75 -0.2
2,109,623 - AO353_09615 0.80 +1.0
2,109,623 - AO353_09615 0.80 +0.2
2,109,677 + AO353_09615 0.86 +0.0
2,109,720 + AO353_09615 0.90 -0.4
2,109,720 + AO353_09615 0.90 -0.8
2,109,720 + AO353_09615 0.90 +0.5
2,109,720 + AO353_09615 0.90 -2.4
2,109,721 - AO353_09615 0.90 -0.9
2,109,758 + +0.4
2,109,758 + +0.2
2,109,758 + +0.1
2,109,758 + -0.3
2,109,759 - -2.0
2,109,759 - +0.5
2,109,759 - +0.0
2,109,759 - +0.0
2,109,761 + -0.4
2,109,762 - -1.3
2,109,775 + +0.8
2,109,776 - +0.1
2,109,858 + -0.6
2,109,859 - +1.0
2,109,859 - +1.3
2,109,872 + +0.4
2,109,923 + -0.2
2,109,923 + +0.2
2,109,923 + -0.7
2,109,923 + -0.1
2,109,923 + +0.5
2,109,923 + -0.8
2,109,923 + +0.9
2,109,923 + -0.1
2,109,923 + +0.9
2,109,923 + -1.3
2,109,923 + -0.3
2,109,924 - +1.1
2,109,924 - +0.8
2,109,924 - +0.3
2,109,924 - +0.5
2,109,924 - -1.8
2,109,924 - +0.6
2,110,125 - AO353_09620 0.11 +0.4
2,110,125 - AO353_09620 0.11 -0.2
2,110,277 + AO353_09620 0.17 +0.7
2,110,277 + AO353_09620 0.17 +0.1
2,110,277 + AO353_09620 0.17 -0.1
2,110,277 + AO353_09620 0.17 +1.1
2,110,277 + AO353_09620 0.17 +1.5
2,110,277 + AO353_09620 0.17 +0.0
2,110,277 + AO353_09620 0.17 +0.8
2,110,278 - AO353_09620 0.17 -0.9
2,110,278 - AO353_09620 0.17 -0.7
2,110,278 - AO353_09620 0.17 -2.2
2,110,278 - AO353_09620 0.17 -0.1
2,110,278 - AO353_09620 0.17 +0.0
2,110,278 - AO353_09620 0.17 -0.7
2,110,278 - AO353_09620 0.17 -0.0
2,110,278 - AO353_09620 0.17 -0.5
2,110,406 - AO353_09620 0.22 -1.4
2,110,547 - AO353_09620 0.27 +0.4
2,110,742 - AO353_09620 0.34 +1.7
2,110,764 + AO353_09620 0.35 +0.7
2,110,765 - AO353_09620 0.35 -0.3
2,110,765 - AO353_09620 0.35 +0.4
2,110,765 - AO353_09620 0.35 +0.3
2,110,765 - AO353_09620 0.35 -2.0
2,110,868 + AO353_09620 0.39 -0.2
2,110,868 + AO353_09620 0.39 +0.0
2,110,869 - AO353_09620 0.39 +0.7
2,110,869 - AO353_09620 0.39 +0.4
2,111,051 + AO353_09620 0.46 +0.0
2,111,052 - AO353_09620 0.46 +0.8
2,111,325 + AO353_09620 0.56 +0.3
2,111,325 + AO353_09620 0.56 -0.0
2,111,602 + AO353_09620 0.66 +0.7
2,111,602 + AO353_09620 0.66 -0.4
2,111,602 + AO353_09620 0.66 +0.7
2,111,602 + AO353_09620 0.66 -0.2
2,111,602 + AO353_09620 0.66 -0.3
2,111,602 + AO353_09620 0.66 +0.2
2,111,602 + AO353_09620 0.66 +0.2
2,111,602 + AO353_09620 0.66 -0.7
2,111,602 + AO353_09620 0.66 +0.3
2,111,602 + AO353_09620 0.66 -0.8
2,111,602 + AO353_09620 0.66 -0.6
2,111,603 - AO353_09620 0.67 +0.5
2,111,603 - AO353_09620 0.67 +0.5
2,111,603 - AO353_09620 0.67 +0.5
2,111,603 - AO353_09620 0.67 -0.7
2,111,603 - AO353_09620 0.67 +1.5
2,111,603 - AO353_09620 0.67 +0.8
2,111,762 + AO353_09620 0.72 -0.8
2,111,762 + AO353_09620 0.72 +1.2
2,111,763 - AO353_09620 0.72 +1.1
2,111,763 - AO353_09620 0.72 +1.2
2,111,763 - AO353_09620 0.72 -0.8
2,111,763 - AO353_09620 0.72 +0.8
2,111,763 - AO353_09620 0.72 +0.2
2,111,852 + AO353_09620 0.76 -0.1
2,111,877 + AO353_09620 0.77 +1.1
2,111,877 + AO353_09620 0.77 +0.5
2,111,878 - AO353_09620 0.77 -0.8
2,111,906 + AO353_09620 0.78 -0.1
2,111,907 - AO353_09620 0.78 +0.4
2,112,191 + AO353_09620 0.88 -0.1
2,112,192 - AO353_09620 0.89 +0.7
2,112,194 + AO353_09620 0.89 -1.4
2,112,291 - -0.5
2,112,384 + -0.2
2,112,477 - +0.1
2,112,497 + +0.2
2,112,497 + +0.8
2,112,498 - +0.4
2,112,587 - +0.0
2,112,587 - +0.6
2,112,587 - -1.3
2,112,587 - +0.0
2,112,603 + +1.9
2,112,603 + -0.3
2,112,612 + +0.2
2,112,612 + +1.1
2,112,612 + -0.1
2,112,612 + -0.8
2,112,612 + +0.6
2,112,612 + -0.6
2,112,612 + +0.5
2,112,613 - -0.0
2,112,613 - -0.3
2,112,613 - -0.1
2,112,613 - -0.7
2,112,613 - -0.2

Or see this region's nucleotide sequence