Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09615 and AO353_09620 overlap by 8 nucleotides AO353_09620 and AO353_09625 are separated by 108 nucleotides
AO353_09615: AO353_09615 - type VI secretion protein, at 2,108,776 to 2,109,828
_09615
AO353_09620: AO353_09620 - ClpV1 family T6SS ATPase, at 2,109,821 to 2,112,499
_09620
AO353_09625: AO353_09625 - type VI secretion protein ImpA, at 2,112,608 to 2,114,548
_09625
Position (kb)
2109
2110
2111
2112
2113 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2108.848 kb on + strand at 2108.848 kb on + strand at 2108.848 kb on + strand at 2108.848 kb on + strand at 2108.849 kb on - strand at 2108.849 kb on - strand at 2108.849 kb on - strand at 2108.994 kb on - strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.088 kb on + strand, within AO353_09615 at 2109.089 kb on - strand, within AO353_09615 at 2109.089 kb on - strand, within AO353_09615 at 2109.089 kb on - strand, within AO353_09615 at 2109.089 kb on - strand, within AO353_09615 at 2109.089 kb on - strand, within AO353_09615 at 2109.089 kb on - strand, within AO353_09615 at 2109.089 kb on - strand, within AO353_09615 at 2109.089 kb on - strand, within AO353_09615 at 2109.175 kb on + strand, within AO353_09615 at 2109.175 kb on + strand, within AO353_09615 at 2109.232 kb on + strand, within AO353_09615 at 2109.323 kb on - strand, within AO353_09615 at 2109.353 kb on - strand, within AO353_09615 at 2109.376 kb on - strand, within AO353_09615 at 2109.376 kb on - strand, within AO353_09615 at 2109.385 kb on + strand, within AO353_09615 at 2109.385 kb on + strand, within AO353_09615 at 2109.386 kb on - strand, within AO353_09615 at 2109.386 kb on - strand, within AO353_09615 at 2109.415 kb on + strand, within AO353_09615 at 2109.415 kb on + strand, within AO353_09615 at 2109.415 kb on + strand, within AO353_09615 at 2109.415 kb on + strand, within AO353_09615 at 2109.415 kb on + strand, within AO353_09615 at 2109.415 kb on + strand, within AO353_09615 at 2109.416 kb on - strand, within AO353_09615 at 2109.416 kb on - strand, within AO353_09615 at 2109.503 kb on - strand, within AO353_09615 at 2109.503 kb on - strand, within AO353_09615 at 2109.503 kb on - strand, within AO353_09615 at 2109.562 kb on + strand, within AO353_09615 at 2109.562 kb on + strand, within AO353_09615 at 2109.562 kb on + strand, within AO353_09615 at 2109.562 kb on + strand, within AO353_09615 at 2109.562 kb on + strand, within AO353_09615 at 2109.562 kb on + strand, within AO353_09615 at 2109.562 kb on + strand, within AO353_09615 at 2109.562 kb on + strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.563 kb on - strand, within AO353_09615 at 2109.623 kb on - strand, within AO353_09615 at 2109.623 kb on - strand, within AO353_09615 at 2109.677 kb on + strand, within AO353_09615 at 2109.720 kb on + strand, within AO353_09615 at 2109.720 kb on + strand, within AO353_09615 at 2109.720 kb on + strand, within AO353_09615 at 2109.720 kb on + strand, within AO353_09615 at 2109.721 kb on - strand, within AO353_09615 at 2109.758 kb on + strand at 2109.758 kb on + strand at 2109.758 kb on + strand at 2109.758 kb on + strand at 2109.759 kb on - strand at 2109.759 kb on - strand at 2109.759 kb on - strand at 2109.759 kb on - strand at 2109.761 kb on + strand at 2109.762 kb on - strand at 2109.775 kb on + strand at 2109.776 kb on - strand at 2109.858 kb on + strand at 2109.859 kb on - strand at 2109.859 kb on - strand at 2109.872 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.923 kb on + strand at 2109.924 kb on - strand at 2109.924 kb on - strand at 2109.924 kb on - strand at 2109.924 kb on - strand at 2109.924 kb on - strand at 2109.924 kb on - strand at 2110.125 kb on - strand, within AO353_09620 at 2110.125 kb on - strand, within AO353_09620 at 2110.277 kb on + strand, within AO353_09620 at 2110.277 kb on + strand, within AO353_09620 at 2110.277 kb on + strand, within AO353_09620 at 2110.277 kb on + strand, within AO353_09620 at 2110.277 kb on + strand, within AO353_09620 at 2110.277 kb on + strand, within AO353_09620 at 2110.277 kb on + strand, within AO353_09620 at 2110.278 kb on - strand, within AO353_09620 at 2110.278 kb on - strand, within AO353_09620 at 2110.278 kb on - strand, within AO353_09620 at 2110.278 kb on - strand, within AO353_09620 at 2110.278 kb on - strand, within AO353_09620 at 2110.278 kb on - strand, within AO353_09620 at 2110.278 kb on - strand, within AO353_09620 at 2110.278 kb on - strand, within AO353_09620 at 2110.406 kb on - strand, within AO353_09620 at 2110.547 kb on - strand, within AO353_09620 at 2110.742 kb on - strand, within AO353_09620 at 2110.764 kb on + strand, within AO353_09620 at 2110.765 kb on - strand, within AO353_09620 at 2110.765 kb on - strand, within AO353_09620 at 2110.765 kb on - strand, within AO353_09620 at 2110.765 kb on - strand, within AO353_09620 at 2110.868 kb on + strand, within AO353_09620 at 2110.868 kb on + strand, within AO353_09620 at 2110.869 kb on - strand, within AO353_09620 at 2110.869 kb on - strand, within AO353_09620 at 2111.051 kb on + strand, within AO353_09620 at 2111.052 kb on - strand, within AO353_09620 at 2111.325 kb on + strand, within AO353_09620 at 2111.325 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.602 kb on + strand, within AO353_09620 at 2111.603 kb on - strand, within AO353_09620 at 2111.603 kb on - strand, within AO353_09620 at 2111.603 kb on - strand, within AO353_09620 at 2111.603 kb on - strand, within AO353_09620 at 2111.603 kb on - strand, within AO353_09620 at 2111.603 kb on - strand, within AO353_09620 at 2111.762 kb on + strand, within AO353_09620 at 2111.762 kb on + strand, within AO353_09620 at 2111.763 kb on - strand, within AO353_09620 at 2111.763 kb on - strand, within AO353_09620 at 2111.763 kb on - strand, within AO353_09620 at 2111.763 kb on - strand, within AO353_09620 at 2111.763 kb on - strand, within AO353_09620 at 2111.852 kb on + strand, within AO353_09620 at 2111.877 kb on + strand, within AO353_09620 at 2111.877 kb on + strand, within AO353_09620 at 2111.878 kb on - strand, within AO353_09620 at 2111.906 kb on + strand, within AO353_09620 at 2111.907 kb on - strand, within AO353_09620 at 2112.191 kb on + strand, within AO353_09620 at 2112.192 kb on - strand, within AO353_09620 at 2112.194 kb on + strand, within AO353_09620 at 2112.291 kb on - strand at 2112.384 kb on + strand at 2112.477 kb on - strand at 2112.497 kb on + strand at 2112.497 kb on + strand at 2112.498 kb on - strand at 2112.587 kb on - strand at 2112.587 kb on - strand at 2112.587 kb on - strand at 2112.587 kb on - strand at 2112.603 kb on + strand at 2112.603 kb on + strand at 2112.612 kb on + strand at 2112.612 kb on + strand at 2112.612 kb on + strand at 2112.612 kb on + strand at 2112.612 kb on + strand at 2112.612 kb on + strand at 2112.612 kb on + strand at 2112.613 kb on - strand at 2112.613 kb on - strand at 2112.613 kb on - strand at 2112.613 kb on - strand at 2112.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,108,848 + -0.1 2,108,848 + +0.0 2,108,848 + -0.8 2,108,848 + -0.2 2,108,849 - +0.1 2,108,849 - +0.2 2,108,849 - +0.6 2,108,994 - AO353_09615 0.21 -0.8 2,109,088 + AO353_09615 0.30 -0.2 2,109,088 + AO353_09615 0.30 -0.6 2,109,088 + AO353_09615 0.30 -0.4 2,109,088 + AO353_09615 0.30 +0.0 2,109,088 + AO353_09615 0.30 +0.1 2,109,088 + AO353_09615 0.30 -0.8 2,109,088 + AO353_09615 0.30 +0.0 2,109,088 + AO353_09615 0.30 +1.1 2,109,088 + AO353_09615 0.30 -1.6 2,109,088 + AO353_09615 0.30 -0.4 2,109,088 + AO353_09615 0.30 -0.3 2,109,089 - AO353_09615 0.30 +0.5 2,109,089 - AO353_09615 0.30 +0.0 2,109,089 - AO353_09615 0.30 -0.2 2,109,089 - AO353_09615 0.30 -1.5 2,109,089 - AO353_09615 0.30 +0.9 2,109,089 - AO353_09615 0.30 -0.1 2,109,089 - AO353_09615 0.30 +0.2 2,109,089 - AO353_09615 0.30 -0.4 2,109,175 + AO353_09615 0.38 +0.3 2,109,175 + AO353_09615 0.38 +0.1 2,109,232 + AO353_09615 0.43 -0.1 2,109,323 - AO353_09615 0.52 -1.6 2,109,353 - AO353_09615 0.55 -0.3 2,109,376 - AO353_09615 0.57 -1.7 2,109,376 - AO353_09615 0.57 +0.8 2,109,385 + AO353_09615 0.58 +0.7 2,109,385 + AO353_09615 0.58 +0.2 2,109,386 - AO353_09615 0.58 +0.1 2,109,386 - AO353_09615 0.58 -1.4 2,109,415 + AO353_09615 0.61 -2.0 2,109,415 + AO353_09615 0.61 +0.0 2,109,415 + AO353_09615 0.61 -1.6 2,109,415 + AO353_09615 0.61 -1.0 2,109,415 + AO353_09615 0.61 -1.0 2,109,415 + AO353_09615 0.61 +0.8 2,109,416 - AO353_09615 0.61 -1.7 2,109,416 - AO353_09615 0.61 +0.7 2,109,503 - AO353_09615 0.69 +0.3 2,109,503 - AO353_09615 0.69 -0.8 2,109,503 - AO353_09615 0.69 -0.6 2,109,562 + AO353_09615 0.75 -2.2 2,109,562 + AO353_09615 0.75 -0.2 2,109,562 + AO353_09615 0.75 -2.3 2,109,562 + AO353_09615 0.75 -0.9 2,109,562 + AO353_09615 0.75 +0.8 2,109,562 + AO353_09615 0.75 -0.3 2,109,562 + AO353_09615 0.75 +0.9 2,109,562 + AO353_09615 0.75 -1.8 2,109,563 - AO353_09615 0.75 -0.3 2,109,563 - AO353_09615 0.75 +0.1 2,109,563 - AO353_09615 0.75 +0.9 2,109,563 - AO353_09615 0.75 -0.3 2,109,563 - AO353_09615 0.75 +0.8 2,109,563 - AO353_09615 0.75 +0.7 2,109,563 - AO353_09615 0.75 -0.2 2,109,563 - AO353_09615 0.75 +1.4 2,109,563 - AO353_09615 0.75 -0.1 2,109,563 - AO353_09615 0.75 -0.8 2,109,563 - AO353_09615 0.75 -0.8 2,109,563 - AO353_09615 0.75 +0.0 2,109,563 - AO353_09615 0.75 -0.2 2,109,623 - AO353_09615 0.80 +1.0 2,109,623 - AO353_09615 0.80 +0.2 2,109,677 + AO353_09615 0.86 +0.0 2,109,720 + AO353_09615 0.90 -0.4 2,109,720 + AO353_09615 0.90 -0.8 2,109,720 + AO353_09615 0.90 +0.5 2,109,720 + AO353_09615 0.90 -2.4 2,109,721 - AO353_09615 0.90 -0.9 2,109,758 + +0.4 2,109,758 + +0.2 2,109,758 + +0.1 2,109,758 + -0.3 2,109,759 - -2.0 2,109,759 - +0.5 2,109,759 - +0.0 2,109,759 - +0.0 2,109,761 + -0.4 2,109,762 - -1.3 2,109,775 + +0.8 2,109,776 - +0.1 2,109,858 + -0.6 2,109,859 - +1.0 2,109,859 - +1.3 2,109,872 + +0.4 2,109,923 + -0.2 2,109,923 + +0.2 2,109,923 + -0.7 2,109,923 + -0.1 2,109,923 + +0.5 2,109,923 + -0.8 2,109,923 + +0.9 2,109,923 + -0.1 2,109,923 + +0.9 2,109,923 + -1.3 2,109,923 + -0.3 2,109,924 - +1.1 2,109,924 - +0.8 2,109,924 - +0.3 2,109,924 - +0.5 2,109,924 - -1.8 2,109,924 - +0.6 2,110,125 - AO353_09620 0.11 +0.4 2,110,125 - AO353_09620 0.11 -0.2 2,110,277 + AO353_09620 0.17 +0.7 2,110,277 + AO353_09620 0.17 +0.1 2,110,277 + AO353_09620 0.17 -0.1 2,110,277 + AO353_09620 0.17 +1.1 2,110,277 + AO353_09620 0.17 +1.5 2,110,277 + AO353_09620 0.17 +0.0 2,110,277 + AO353_09620 0.17 +0.8 2,110,278 - AO353_09620 0.17 -0.9 2,110,278 - AO353_09620 0.17 -0.7 2,110,278 - AO353_09620 0.17 -2.2 2,110,278 - AO353_09620 0.17 -0.1 2,110,278 - AO353_09620 0.17 +0.0 2,110,278 - AO353_09620 0.17 -0.7 2,110,278 - AO353_09620 0.17 -0.0 2,110,278 - AO353_09620 0.17 -0.5 2,110,406 - AO353_09620 0.22 -1.4 2,110,547 - AO353_09620 0.27 +0.4 2,110,742 - AO353_09620 0.34 +1.7 2,110,764 + AO353_09620 0.35 +0.7 2,110,765 - AO353_09620 0.35 -0.3 2,110,765 - AO353_09620 0.35 +0.4 2,110,765 - AO353_09620 0.35 +0.3 2,110,765 - AO353_09620 0.35 -2.0 2,110,868 + AO353_09620 0.39 -0.2 2,110,868 + AO353_09620 0.39 +0.0 2,110,869 - AO353_09620 0.39 +0.7 2,110,869 - AO353_09620 0.39 +0.4 2,111,051 + AO353_09620 0.46 +0.0 2,111,052 - AO353_09620 0.46 +0.8 2,111,325 + AO353_09620 0.56 +0.3 2,111,325 + AO353_09620 0.56 -0.0 2,111,602 + AO353_09620 0.66 +0.7 2,111,602 + AO353_09620 0.66 -0.4 2,111,602 + AO353_09620 0.66 +0.7 2,111,602 + AO353_09620 0.66 -0.2 2,111,602 + AO353_09620 0.66 -0.3 2,111,602 + AO353_09620 0.66 +0.2 2,111,602 + AO353_09620 0.66 +0.2 2,111,602 + AO353_09620 0.66 -0.7 2,111,602 + AO353_09620 0.66 +0.3 2,111,602 + AO353_09620 0.66 -0.8 2,111,602 + AO353_09620 0.66 -0.6 2,111,603 - AO353_09620 0.67 +0.5 2,111,603 - AO353_09620 0.67 +0.5 2,111,603 - AO353_09620 0.67 +0.5 2,111,603 - AO353_09620 0.67 -0.7 2,111,603 - AO353_09620 0.67 +1.5 2,111,603 - AO353_09620 0.67 +0.8 2,111,762 + AO353_09620 0.72 -0.8 2,111,762 + AO353_09620 0.72 +1.2 2,111,763 - AO353_09620 0.72 +1.1 2,111,763 - AO353_09620 0.72 +1.2 2,111,763 - AO353_09620 0.72 -0.8 2,111,763 - AO353_09620 0.72 +0.8 2,111,763 - AO353_09620 0.72 +0.2 2,111,852 + AO353_09620 0.76 -0.1 2,111,877 + AO353_09620 0.77 +1.1 2,111,877 + AO353_09620 0.77 +0.5 2,111,878 - AO353_09620 0.77 -0.8 2,111,906 + AO353_09620 0.78 -0.1 2,111,907 - AO353_09620 0.78 +0.4 2,112,191 + AO353_09620 0.88 -0.1 2,112,192 - AO353_09620 0.89 +0.7 2,112,194 + AO353_09620 0.89 -1.4 2,112,291 - -0.5 2,112,384 + -0.2 2,112,477 - +0.1 2,112,497 + +0.2 2,112,497 + +0.8 2,112,498 - +0.4 2,112,587 - +0.0 2,112,587 - +0.6 2,112,587 - -1.3 2,112,587 - +0.0 2,112,603 + +1.9 2,112,603 + -0.3 2,112,612 + +0.2 2,112,612 + +1.1 2,112,612 + -0.1 2,112,612 + -0.8 2,112,612 + +0.6 2,112,612 + -0.6 2,112,612 + +0.5 2,112,613 - -0.0 2,112,613 - -0.3 2,112,613 - -0.1 2,112,613 - -0.7 2,112,613 - -0.2
Or see this region's nucleotide sequence