Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006473

Experiment: D-Gluconic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Gluconic Acid (C)
2,859,378	+		ABIE53_006471	0.48	+0.9
2,859,378	+		ABIE53_006471	0.48	+0.1
2,859,379	-		ABIE53_006471	0.49	-0.5
2,859,379	-		ABIE53_006471	0.49	-1.2
2,859,390	+		ABIE53_006471	0.50	+0.5
2,859,414	+		ABIE53_006471	0.53	+0.0
2,859,414	+		ABIE53_006471	0.53	-1.1
2,859,414	+		ABIE53_006471	0.53	+1.5
2,859,531	+		ABIE53_006471	0.66	+0.1
2,859,531	+		ABIE53_006471	0.66	-1.6
2,859,531	+		ABIE53_006471	0.66	-0.7
2,859,531	+		ABIE53_006471	0.66	+3.2
2,859,531	+		ABIE53_006471	0.66	+0.5
2,859,531	+		ABIE53_006471	0.66	+0.3
2,859,531	+		ABIE53_006471	0.66	+1.1
2,859,532	-		ABIE53_006471	0.66	-1.3
2,859,734	+				-1.3
2,859,734	+				-0.4
2,859,734	+				-0.3
2,859,734	+				-1.2
2,859,735	-				+0.9
2,859,735	-				+1.1
2,859,735	-				+0.6
2,859,735	-				-0.7
2,859,735	-				+0.2
2,859,738	+				-0.8
2,859,738	+				+0.3
2,859,738	+				+2.5
2,859,738	+				-0.5
2,859,738	+				+0.2
2,859,739	-				+1.5
2,859,739	-				-0.2
2,859,753	+				+1.9
2,859,753	+				-0.5
2,859,824	+				+0.7
2,859,824	+				+0.2
2,859,824	+				+0.5
2,859,825	-				+0.7
2,859,825	-				+0.5
2,859,825	-				+1.6
2,859,850	-				-0.9
2,859,850	-				-1.6
2,859,855	+				-0.1
2,859,855	+				-0.2
2,859,876	+				+0.2
2,859,877	-				-0.1
2,859,877	-				+2.5
2,859,928	+		ABIE53_006472	0.12	-1.0
2,859,928	+		ABIE53_006472	0.12	-0.4
2,859,928	+		ABIE53_006472	0.12	-0.1
2,859,928	+		ABIE53_006472	0.12	-1.1
2,859,929	-		ABIE53_006472	0.12	-0.5
2,859,929	-		ABIE53_006472	0.12	-0.9
2,859,929	-		ABIE53_006472	0.12	-0.7
2,859,929	-		ABIE53_006472	0.12	+0.1
2,859,929	-		ABIE53_006472	0.12	-1.3
2,859,940	+		ABIE53_006472	0.15	-0.8
2,860,007	+		ABIE53_006472	0.28	-0.7
2,860,007	+		ABIE53_006472	0.28	+0.6
2,860,007	+		ABIE53_006472	0.28	+0.2
2,860,008	-		ABIE53_006472	0.28	-0.4
2,860,008	-		ABIE53_006472	0.28	-0.3
2,860,008	-		ABIE53_006472	0.28	-0.8
2,860,079	+		ABIE53_006472	0.43	+0.2
2,860,098	+		ABIE53_006472	0.47	-0.1
2,860,098	+		ABIE53_006472	0.47	-0.3
2,860,098	+		ABIE53_006472	0.47	-1.6
2,860,098	+		ABIE53_006472	0.47	-0.3
2,860,098	+		ABIE53_006472	0.47	-0.1
2,860,099	-		ABIE53_006472	0.47	-1.1
2,860,099	-		ABIE53_006472	0.47	+0.4
2,860,398	+				-0.5
2,860,398	+				+2.1
2,860,398	+				-0.4
2,860,399	-				+0.7
2,860,415	+				-0.8
2,860,416	-				+0.2
2,860,416	-				-1.1
2,860,416	-				-0.7
2,860,452	-				+0.9
2,860,452	-				+0.3
2,860,545	+		ABIE53_006473	0.15	+1.3
2,860,808	-		ABIE53_006473	0.34	-2.4
2,860,894	+		ABIE53_006473	0.41	-1.0
2,860,894	+		ABIE53_006473	0.41	-2.2
2,860,894	+		ABIE53_006473	0.41	-0.3
2,860,894	+		ABIE53_006473	0.41	+0.5
2,860,894	+		ABIE53_006473	0.41	+4.1
2,860,894	+		ABIE53_006473	0.41	-0.3
2,860,895	-		ABIE53_006473	0.41	-1.4
2,860,895	-		ABIE53_006473	0.41	+0.9
2,860,895	-		ABIE53_006473	0.41	-0.7
2,860,895	-		ABIE53_006473	0.41	+0.4
2,861,435	-		ABIE53_006473	0.80	+1.2
2,861,479	+		ABIE53_006473	0.83	-0.2
2,861,479	+		ABIE53_006473	0.83	-0.5
2,861,479	+		ABIE53_006473	0.83	+0.0
2,861,479	+		ABIE53_006473	0.83	-1.4
2,861,480	-		ABIE53_006473	0.83	+0.9
2,861,539	+		ABIE53_006473	0.87	+2.8
2,861,540	-		ABIE53_006473	0.87	+0.5
2,861,540	-		ABIE53_006473	0.87	-0.7
2,861,551	+		ABIE53_006473	0.88	+1.5
2,861,551	+		ABIE53_006473	0.88	-0.1
2,861,551	+		ABIE53_006473	0.88	-1.0
2,861,552	-		ABIE53_006473	0.88	-0.1
2,861,552	-		ABIE53_006473	0.88	-1.1
2,861,552	-		ABIE53_006473	0.88	-1.5
2,861,552	-		ABIE53_006473	0.88	+0.2
2,861,552	-		ABIE53_006473	0.88	+0.2
2,861,599	+				-0.4
2,861,600	-				-2.0
2,861,609	-				+1.7
2,861,660	-				-0.2
2,861,660	-				-0.2
2,861,688	+				-1.1
2,861,688	+				+0.1
2,861,688	+				+1.2
2,861,689	-				-0.6
2,861,718	-				+0.7
2,861,775	+		ABIE53_006474	0.16	-0.4
2,861,776	-		ABIE53_006474	0.16	+0.9
2,861,776	-		ABIE53_006474	0.16	-0.2
2,861,832	+		ABIE53_006474	0.27	-0.5
2,861,832	+		ABIE53_006474	0.27	-0.5
2,861,833	-		ABIE53_006474	0.27	+0.1
2,861,833	-		ABIE53_006474	0.27	+1.5
2,861,840	+		ABIE53_006474	0.28	-0.6
2,861,868	-		ABIE53_006474	0.33	+0.3
2,861,880	+		ABIE53_006474	0.36	-0.3
2,861,880	+		ABIE53_006474	0.36	-0.6
2,861,880	+		ABIE53_006474	0.36	+0.5
2,861,880	+		ABIE53_006474	0.36	-0.8
2,861,880	+		ABIE53_006474	0.36	-0.7
2,861,881	-		ABIE53_006474	0.36	-0.3
2,861,881	-		ABIE53_006474	0.36	+0.5
2,861,881	-		ABIE53_006474	0.36	+0.9
2,861,881	-		ABIE53_006474	0.36	+0.3
2,861,881	-		ABIE53_006474	0.36	+0.2
2,861,881	-		ABIE53_006474	0.36	-0.3
2,861,881	-		ABIE53_006474	0.36	-1.0
2,861,881	-		ABIE53_006474	0.36	-0.3
2,861,884	+		ABIE53_006474	0.36	-0.2
2,861,884	+		ABIE53_006474	0.36	+2.8
2,861,884	+		ABIE53_006474	0.36	-1.9
2,861,884	+		ABIE53_006474	0.36	-0.1
2,861,884	+		ABIE53_006474	0.36	-0.6
2,861,884	+		ABIE53_006474	0.36	-1.6
2,861,884	+		ABIE53_006474	0.36	-0.5
2,861,884	+		ABIE53_006474	0.36	+0.5
2,861,884	+		ABIE53_006474	0.36	-1.3
2,861,884	+		ABIE53_006474	0.36	+2.9
2,861,885	-		ABIE53_006474	0.36	+0.5
2,861,885	-		ABIE53_006474	0.36	-0.2
2,861,885	-		ABIE53_006474	0.36	+0.5
2,861,885	-		ABIE53_006474	0.36	-0.7
2,861,885	-		ABIE53_006474	0.36	+1.8
2,861,885	-		ABIE53_006474	0.36	+1.2
2,861,885	-		ABIE53_006474	0.36	+0.9
2,861,885	-		ABIE53_006474	0.36	+0.4
2,861,885	-		ABIE53_006474	0.36	+3.2
2,861,885	-		ABIE53_006474	0.36	+1.5
2,861,885	-		ABIE53_006474	0.36	+3.2
2,861,887	-		ABIE53_006474	0.37	-1.3
2,861,922	+		ABIE53_006474	0.43	-1.5
2,862,048	+		ABIE53_006474	0.66	+0.4
2,862,048	+		ABIE53_006474	0.66	-0.5
2,862,048	+		ABIE53_006474	0.66	-0.3
2,862,048	+		ABIE53_006474	0.66	-0.7
2,862,049	-		ABIE53_006474	0.67	-0.1
2,862,049	-		ABIE53_006474	0.67	-0.3
2,862,049	-		ABIE53_006474	0.67	-0.2
2,862,231	+				+1.1
2,862,237	+				+3.2
2,862,243	+				-0.3
2,862,243	+				-2.6
2,862,244	-				-1.4
2,862,244	-				-0.2
2,862,244	-				-1.5
2,862,300	-				-0.7
2,862,341	+				-1.6
2,862,341	+				+1.5
2,862,341	+				-0.4
2,862,341	+				+0.4
2,862,341	+				+1.2
2,862,341	+				+0.2
2,862,341	+				-0.1
2,862,341	+				-0.9
2,862,341	+				+0.5
2,862,341	+				-0.8
2,862,341	+				+0.5
2,862,341	+				+0.5
2,862,341	+				+2.1
2,862,341	+				+0.7
2,862,342	-				-3.0
2,862,342	-				-0.3
2,862,342	-				-1.5
2,862,342	-				-0.1
2,862,344	+				+0.9
2,862,344	+				-0.9
2,862,344	+				+2.2
2,862,344	+				-2.4
2,862,344	+				+0.9
2,862,345	-				-0.5
2,862,383	+				-0.3
2,862,383	+				+0.9
2,862,439	+				-0.2
2,862,458	+				+0.5
2,862,458	+				-1.0
2,862,486	+				+0.5
2,862,486	+				+2.6
2,862,486	+				-1.5
2,862,486	+				-0.7
2,862,487	-				-0.1
2,862,487	-				+1.2
2,862,487	-				+0.2
2,862,634	-		ABIE53_006475	0.18	+0.5
2,862,634	-		ABIE53_006475	0.18	+2.5