Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000508

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000507 and ABIE53_000508 overlap by 17 nucleotidesABIE53_000508 and ABIE53_000509 overlap by 41 nucleotidesABIE53_000509 and ABIE53_000510 overlap by 4 nucleotides ABIE53_000507: ABIE53_000507 - hypothetical protein, at 546,028 to 547,149 _000507 ABIE53_000508: ABIE53_000508 - UDP-N-acetyl-D-galactosamine dehydrogenase, at 547,133 to 548,434 _000508 ABIE53_000509: ABIE53_000509 - beta-glucanase (GH16 family), at 548,394 to 549,134 _000509 ABIE53_000510: ABIE53_000510 - cellulose synthase/poly-beta-1,6-N-acetylglucosamine synthase-like glycosyltransferase, at 549,131 to 549,523 _000510 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 546.163 kb on + strand, within ABIE53_000507at 546.164 kb on - strand, within ABIE53_000507at 546.164 kb on - strand, within ABIE53_000507at 546.164 kb on - strand, within ABIE53_000507at 546.172 kb on + strand, within ABIE53_000507at 546.356 kb on - strand, within ABIE53_000507at 546.356 kb on - strand, within ABIE53_000507at 546.356 kb on - strand, within ABIE53_000507at 546.356 kb on - strand, within ABIE53_000507at 546.356 kb on - strand, within ABIE53_000507at 546.392 kb on - strand, within ABIE53_000507at 546.392 kb on - strand, within ABIE53_000507at 546.400 kb on + strand, within ABIE53_000507at 546.478 kb on - strand, within ABIE53_000507at 546.478 kb on - strand, within ABIE53_000507at 546.478 kb on - strand, within ABIE53_000507at 546.531 kb on + strand, within ABIE53_000507at 546.531 kb on + strand, within ABIE53_000507at 546.531 kb on + strand, within ABIE53_000507at 546.531 kb on + strand, within ABIE53_000507at 546.531 kb on + strand, within ABIE53_000507at 546.531 kb on + strand, within ABIE53_000507at 546.532 kb on - strand, within ABIE53_000507at 546.532 kb on - strand, within ABIE53_000507at 546.532 kb on - strand, within ABIE53_000507at 546.532 kb on - strand, within ABIE53_000507at 546.532 kb on - strand, within ABIE53_000507at 546.532 kb on - strand, within ABIE53_000507at 546.568 kb on + strand, within ABIE53_000507at 546.568 kb on + strand, within ABIE53_000507at 546.569 kb on - strand, within ABIE53_000507at 546.569 kb on - strand, within ABIE53_000507at 546.569 kb on - strand, within ABIE53_000507at 546.569 kb on - strand, within ABIE53_000507at 546.624 kb on + strand, within ABIE53_000507at 546.762 kb on + strand, within ABIE53_000507at 546.763 kb on - strand, within ABIE53_000507at 546.808 kb on + strand, within ABIE53_000507at 546.808 kb on + strand, within ABIE53_000507at 546.809 kb on - strand, within ABIE53_000507at 546.809 kb on - strand, within ABIE53_000507at 546.809 kb on - strand, within ABIE53_000507at 546.809 kb on - strand, within ABIE53_000507at 546.810 kb on + strand, within ABIE53_000507at 546.810 kb on + strand, within ABIE53_000507at 546.810 kb on + strand, within ABIE53_000507at 546.811 kb on - strand, within ABIE53_000507at 546.811 kb on - strand, within ABIE53_000507at 546.811 kb on - strand, within ABIE53_000507at 547.003 kb on + strand, within ABIE53_000507at 547.004 kb on - strand, within ABIE53_000507at 547.004 kb on - strand, within ABIE53_000507at 547.119 kb on - strandat 547.119 kb on - strandat 547.128 kb on + strandat 547.132 kb on + strandat 547.133 kb on - strandat 547.133 kb on - strandat 547.147 kb on + strandat 547.147 kb on + strandat 547.148 kb on - strandat 547.173 kb on - strandat 547.237 kb on + strandat 547.238 kb on - strandat 547.240 kb on + strandat 547.368 kb on + strand, within ABIE53_000508at 547.368 kb on + strand, within ABIE53_000508at 547.369 kb on - strand, within ABIE53_000508at 547.369 kb on - strand, within ABIE53_000508at 547.369 kb on - strand, within ABIE53_000508at 547.478 kb on + strand, within ABIE53_000508at 547.479 kb on - strand, within ABIE53_000508at 547.493 kb on + strand, within ABIE53_000508at 547.494 kb on - strand, within ABIE53_000508at 547.494 kb on - strand, within ABIE53_000508at 547.596 kb on - strand, within ABIE53_000508at 547.596 kb on - strand, within ABIE53_000508at 547.633 kb on + strand, within ABIE53_000508at 547.633 kb on + strand, within ABIE53_000508at 547.633 kb on + strand, within ABIE53_000508at 547.633 kb on + strand, within ABIE53_000508at 547.633 kb on + strand, within ABIE53_000508at 547.633 kb on + strand, within ABIE53_000508at 547.634 kb on - strand, within ABIE53_000508at 547.634 kb on - strand, within ABIE53_000508at 547.634 kb on - strand, within ABIE53_000508at 547.634 kb on - strand, within ABIE53_000508at 547.634 kb on - strand, within ABIE53_000508at 547.634 kb on - strand, within ABIE53_000508at 547.669 kb on + strand, within ABIE53_000508at 547.703 kb on + strand, within ABIE53_000508at 547.703 kb on + strand, within ABIE53_000508at 547.703 kb on + strand, within ABIE53_000508at 547.703 kb on + strand, within ABIE53_000508at 547.704 kb on - strand, within ABIE53_000508at 547.704 kb on - strand, within ABIE53_000508at 547.704 kb on - strand, within ABIE53_000508at 547.725 kb on - strand, within ABIE53_000508at 547.725 kb on - strand, within ABIE53_000508at 547.725 kb on - strand, within ABIE53_000508at 547.892 kb on + strand, within ABIE53_000508at 547.892 kb on + strand, within ABIE53_000508at 547.892 kb on + strand, within ABIE53_000508at 547.893 kb on - strand, within ABIE53_000508at 547.893 kb on - strand, within ABIE53_000508at 547.893 kb on - strand, within ABIE53_000508at 547.893 kb on - strand, within ABIE53_000508at 547.896 kb on + strand, within ABIE53_000508at 547.897 kb on - strand, within ABIE53_000508at 547.937 kb on + strand, within ABIE53_000508at 547.940 kb on + strand, within ABIE53_000508at 547.940 kb on + strand, within ABIE53_000508at 547.940 kb on + strand, within ABIE53_000508at 547.940 kb on + strand, within ABIE53_000508at 547.941 kb on - strand, within ABIE53_000508at 547.970 kb on + strand, within ABIE53_000508at 547.970 kb on + strand, within ABIE53_000508at 547.970 kb on + strand, within ABIE53_000508at 547.970 kb on + strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.971 kb on - strand, within ABIE53_000508at 547.974 kb on + strand, within ABIE53_000508at 547.974 kb on + strand, within ABIE53_000508at 547.974 kb on + strand, within ABIE53_000508at 547.975 kb on - strand, within ABIE53_000508at 547.975 kb on - strand, within ABIE53_000508at 547.975 kb on - strand, within ABIE53_000508at 548.101 kb on + strand, within ABIE53_000508at 548.101 kb on + strand, within ABIE53_000508at 548.101 kb on + strand, within ABIE53_000508at 548.102 kb on - strand, within ABIE53_000508at 548.102 kb on - strand, within ABIE53_000508at 548.102 kb on - strand, within ABIE53_000508at 548.231 kb on + strand, within ABIE53_000508at 548.231 kb on + strand, within ABIE53_000508at 548.232 kb on - strand, within ABIE53_000508at 548.312 kb on + strandat 548.313 kb on - strandat 548.759 kb on - strand, within ABIE53_000509at 548.776 kb on - strand, within ABIE53_000509at 548.776 kb on - strand, within ABIE53_000509at 548.776 kb on - strand, within ABIE53_000509at 548.776 kb on - strand, within ABIE53_000509at 548.865 kb on + strand, within ABIE53_000509at 548.865 kb on + strand, within ABIE53_000509at 548.865 kb on + strand, within ABIE53_000509at 548.866 kb on - strand, within ABIE53_000509at 548.866 kb on - strand, within ABIE53_000509at 548.866 kb on - strand, within ABIE53_000509at 548.889 kb on - strand, within ABIE53_000509at 548.952 kb on - strand, within ABIE53_000509at 549.023 kb on + strand, within ABIE53_000509at 549.023 kb on + strand, within ABIE53_000509at 549.058 kb on + strand, within ABIE53_000509at 549.058 kb on + strand, within ABIE53_000509at 549.058 kb on + strand, within ABIE53_000509at 549.058 kb on + strand, within ABIE53_000509at 549.058 kb on + strand, within ABIE53_000509at 549.058 kb on + strand, within ABIE53_000509at 549.058 kb on + strand, within ABIE53_000509at 549.059 kb on - strand, within ABIE53_000509at 549.059 kb on - strand, within ABIE53_000509at 549.059 kb on - strand, within ABIE53_000509at 549.059 kb on - strand, within ABIE53_000509at 549.059 kb on - strand, within ABIE53_000509at 549.065 kb on - strandat 549.065 kb on - strandat 549.065 kb on - strandat 549.141 kb on + strandat 549.141 kb on + strandat 549.141 kb on + strandat 549.141 kb on + strandat 549.141 kb on + strandat 549.142 kb on - strandat 549.142 kb on - strandat 549.142 kb on - strandat 549.142 kb on - strandat 549.142 kb on - strandat 549.142 kb on - strandat 549.249 kb on - strand, within ABIE53_000510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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546,163 + ABIE53_000507 0.12 +1.0
546,164 - ABIE53_000507 0.12 +0.5
546,164 - ABIE53_000507 0.12 +1.3
546,164 - ABIE53_000507 0.12 +0.0
546,172 + ABIE53_000507 0.13 +0.0
546,356 - ABIE53_000507 0.29 -0.8
546,356 - ABIE53_000507 0.29 +1.5
546,356 - ABIE53_000507 0.29 +0.3
546,356 - ABIE53_000507 0.29 -3.1
546,356 - ABIE53_000507 0.29 -0.5
546,392 - ABIE53_000507 0.32 -1.2
546,392 - ABIE53_000507 0.32 +0.0
546,400 + ABIE53_000507 0.33 -0.2
546,478 - ABIE53_000507 0.40 -1.5
546,478 - ABIE53_000507 0.40 +0.3
546,478 - ABIE53_000507 0.40 +0.3
546,531 + ABIE53_000507 0.45 +0.8
546,531 + ABIE53_000507 0.45 +2.5
546,531 + ABIE53_000507 0.45 +1.1
546,531 + ABIE53_000507 0.45 -0.8
546,531 + ABIE53_000507 0.45 -1.1
546,531 + ABIE53_000507 0.45 -1.8
546,532 - ABIE53_000507 0.45 -0.2
546,532 - ABIE53_000507 0.45 -1.2
546,532 - ABIE53_000507 0.45 -1.3
546,532 - ABIE53_000507 0.45 -0.6
546,532 - ABIE53_000507 0.45 -1.5
546,532 - ABIE53_000507 0.45 +3.3
546,568 + ABIE53_000507 0.48 -2.4
546,568 + ABIE53_000507 0.48 -0.8
546,569 - ABIE53_000507 0.48 -1.7
546,569 - ABIE53_000507 0.48 +0.8
546,569 - ABIE53_000507 0.48 +0.8
546,569 - ABIE53_000507 0.48 -2.1
546,624 + ABIE53_000507 0.53 -1.4
546,762 + ABIE53_000507 0.65 -1.2
546,763 - ABIE53_000507 0.66 -0.1
546,808 + ABIE53_000507 0.70 -0.3
546,808 + ABIE53_000507 0.70 +1.3
546,809 - ABIE53_000507 0.70 -1.1
546,809 - ABIE53_000507 0.70 +0.0
546,809 - ABIE53_000507 0.70 -0.8
546,809 - ABIE53_000507 0.70 -1.3
546,810 + ABIE53_000507 0.70 -1.6
546,810 + ABIE53_000507 0.70 -0.5
546,810 + ABIE53_000507 0.70 -0.4
546,811 - ABIE53_000507 0.70 +4.3
546,811 - ABIE53_000507 0.70 +0.5
546,811 - ABIE53_000507 0.70 +2.4
547,003 + ABIE53_000507 0.87 -2.2
547,004 - ABIE53_000507 0.87 +0.3
547,004 - ABIE53_000507 0.87 +0.8
547,119 - +0.0
547,119 - -1.8
547,128 + -0.2
547,132 + -0.1
547,133 - -1.5
547,133 - -0.2
547,147 + -0.8
547,147 + +0.1
547,148 - -0.8
547,173 - +2.3
547,237 + +2.3
547,238 - -0.8
547,240 + -0.5
547,368 + ABIE53_000508 0.18 +0.8
547,368 + ABIE53_000508 0.18 -0.5
547,369 - ABIE53_000508 0.18 -0.5
547,369 - ABIE53_000508 0.18 -1.6
547,369 - ABIE53_000508 0.18 -2.3
547,478 + ABIE53_000508 0.26 -1.6
547,479 - ABIE53_000508 0.27 -0.5
547,493 + ABIE53_000508 0.28 -0.5
547,494 - ABIE53_000508 0.28 -1.6
547,494 - ABIE53_000508 0.28 -0.4
547,596 - ABIE53_000508 0.36 -0.8
547,596 - ABIE53_000508 0.36 -1.4
547,633 + ABIE53_000508 0.38 -0.5
547,633 + ABIE53_000508 0.38 +1.3
547,633 + ABIE53_000508 0.38 +0.0
547,633 + ABIE53_000508 0.38 +0.2
547,633 + ABIE53_000508 0.38 -0.7
547,633 + ABIE53_000508 0.38 -0.2
547,634 - ABIE53_000508 0.38 +0.2
547,634 - ABIE53_000508 0.38 -0.7
547,634 - ABIE53_000508 0.38 -1.2
547,634 - ABIE53_000508 0.38 -0.4
547,634 - ABIE53_000508 0.38 -1.1
547,634 - ABIE53_000508 0.38 -0.7
547,669 + ABIE53_000508 0.41 -0.5
547,703 + ABIE53_000508 0.44 -1.2
547,703 + ABIE53_000508 0.44 +0.3
547,703 + ABIE53_000508 0.44 -0.6
547,703 + ABIE53_000508 0.44 -0.5
547,704 - ABIE53_000508 0.44 +0.3
547,704 - ABIE53_000508 0.44 +0.2
547,704 - ABIE53_000508 0.44 +0.1
547,725 - ABIE53_000508 0.45 +0.8
547,725 - ABIE53_000508 0.45 +2.3
547,725 - ABIE53_000508 0.45 -1.7
547,892 + ABIE53_000508 0.58 +0.2
547,892 + ABIE53_000508 0.58 -0.7
547,892 + ABIE53_000508 0.58 -0.8
547,893 - ABIE53_000508 0.58 +1.0
547,893 - ABIE53_000508 0.58 +0.3
547,893 - ABIE53_000508 0.58 +0.9
547,893 - ABIE53_000508 0.58 +3.3
547,896 + ABIE53_000508 0.59 +0.8
547,897 - ABIE53_000508 0.59 -0.2
547,937 + ABIE53_000508 0.62 -0.7
547,940 + ABIE53_000508 0.62 +0.8
547,940 + ABIE53_000508 0.62 -0.5
547,940 + ABIE53_000508 0.62 -0.8
547,940 + ABIE53_000508 0.62 -1.7
547,941 - ABIE53_000508 0.62 -0.2
547,970 + ABIE53_000508 0.64 -1.8
547,970 + ABIE53_000508 0.64 +0.3
547,970 + ABIE53_000508 0.64 +0.4
547,970 + ABIE53_000508 0.64 +0.0
547,971 - ABIE53_000508 0.64 +0.3
547,971 - ABIE53_000508 0.64 -0.8
547,971 - ABIE53_000508 0.64 -1.0
547,971 - ABIE53_000508 0.64 -0.9
547,971 - ABIE53_000508 0.64 -1.4
547,971 - ABIE53_000508 0.64 -0.7
547,971 - ABIE53_000508 0.64 -2.6
547,971 - ABIE53_000508 0.64 -1.0
547,971 - ABIE53_000508 0.64 +0.5
547,974 + ABIE53_000508 0.65 -1.0
547,974 + ABIE53_000508 0.65 -0.7
547,974 + ABIE53_000508 0.65 +1.3
547,975 - ABIE53_000508 0.65 -1.6
547,975 - ABIE53_000508 0.65 +0.8
547,975 - ABIE53_000508 0.65 -2.2
548,101 + ABIE53_000508 0.74 +0.8
548,101 + ABIE53_000508 0.74 +0.5
548,101 + ABIE53_000508 0.74 -0.5
548,102 - ABIE53_000508 0.74 +0.2
548,102 - ABIE53_000508 0.74 +0.6
548,102 - ABIE53_000508 0.74 -0.8
548,231 + ABIE53_000508 0.84 -0.8
548,231 + ABIE53_000508 0.84 +0.2
548,232 - ABIE53_000508 0.84 -0.4
548,312 + +0.3
548,313 - -0.5
548,759 - ABIE53_000509 0.49 +1.8
548,776 - ABIE53_000509 0.52 -2.4
548,776 - ABIE53_000509 0.52 -2.5
548,776 - ABIE53_000509 0.52 -0.8
548,776 - ABIE53_000509 0.52 +3.3
548,865 + ABIE53_000509 0.64 -2.2
548,865 + ABIE53_000509 0.64 -2.4
548,865 + ABIE53_000509 0.64 +1.1
548,866 - ABIE53_000509 0.64 -0.3
548,866 - ABIE53_000509 0.64 -1.6
548,866 - ABIE53_000509 0.64 -0.1
548,889 - ABIE53_000509 0.67 +1.0
548,952 - ABIE53_000509 0.75 -1.1
549,023 + ABIE53_000509 0.85 +1.2
549,023 + ABIE53_000509 0.85 +1.8
549,058 + ABIE53_000509 0.90 +0.0
549,058 + ABIE53_000509 0.90 -1.0
549,058 + ABIE53_000509 0.90 -0.3
549,058 + ABIE53_000509 0.90 -2.6
549,058 + ABIE53_000509 0.90 +0.3
549,058 + ABIE53_000509 0.90 +0.2
549,058 + ABIE53_000509 0.90 -1.0
549,059 - ABIE53_000509 0.90 +1.7
549,059 - ABIE53_000509 0.90 +0.0
549,059 - ABIE53_000509 0.90 -1.9
549,059 - ABIE53_000509 0.90 +1.0
549,059 - ABIE53_000509 0.90 +0.3
549,065 - -0.8
549,065 - -1.0
549,065 - +0.7
549,141 + -0.4
549,141 + -0.5
549,141 + -2.8
549,141 + +0.4
549,141 + -1.5
549,142 - -1.0
549,142 - -0.9
549,142 - -0.8
549,142 - +0.7
549,142 - +0.7
549,142 - -0.3
549,249 - ABIE53_000510 0.30 -1.5

Or see this region's nucleotide sequence