Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000223 and ABIE53_000224 overlap by 14 nucleotides ABIE53_000224 and ABIE53_000225 are separated by 147 nucleotides ABIE53_000225 and ABIE53_000226 are separated by 683 nucleotides
ABIE53_000223: ABIE53_000223 - hypothetical protein, at 227,565 to 227,804
_000223
ABIE53_000224: ABIE53_000224 - hypothetical protein, at 227,791 to 228,126
_000224
ABIE53_000225: ABIE53_000225 - hypothetical protein, at 228,274 to 228,849
_000225
ABIE53_000226: ABIE53_000226 - hypothetical protein, at 229,533 to 230,039
_000226
Position (kb) 228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.333 kb on + strand at 227.333 kb on + strand at 227.334 kb on - strand at 227.334 kb on - strand at 227.371 kb on + strand at 227.371 kb on + strand at 227.372 kb on - strand at 227.372 kb on - strand at 227.416 kb on + strand at 227.417 kb on - strand at 227.417 kb on - strand at 227.460 kb on + strand at 227.460 kb on + strand at 227.461 kb on - strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.469 kb on - strand at 227.469 kb on - strand at 227.514 kb on + strand at 227.515 kb on - strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.560 kb on - strand at 227.560 kb on - strand at 227.658 kb on - strand, within ABIE53_000223 at 227.658 kb on - strand, within ABIE53_000223 at 227.674 kb on + strand, within ABIE53_000223 at 227.709 kb on - strand, within ABIE53_000223 at 227.745 kb on + strand, within ABIE53_000223 at 227.745 kb on + strand, within ABIE53_000223 at 227.746 kb on - strand, within ABIE53_000223 at 227.746 kb on - strand, within ABIE53_000223 at 227.746 kb on - strand, within ABIE53_000223 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.843 kb on + strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.844 kb on - strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.881 kb on + strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.882 kb on - strand, within ABIE53_000224 at 227.885 kb on + strand, within ABIE53_000224 at 227.885 kb on + strand, within ABIE53_000224 at 227.886 kb on - strand, within ABIE53_000224 at 227.886 kb on - strand, within ABIE53_000224 at 227.927 kb on + strand, within ABIE53_000224 at 227.927 kb on + strand, within ABIE53_000224 at 227.928 kb on - strand, within ABIE53_000224 at 227.970 kb on - strand, within ABIE53_000224 at 227.970 kb on - strand, within ABIE53_000224 at 227.970 kb on - strand, within ABIE53_000224 at 228.005 kb on + strand, within ABIE53_000224 at 228.005 kb on + strand, within ABIE53_000224 at 228.005 kb on + strand, within ABIE53_000224 at 228.006 kb on - strand, within ABIE53_000224 at 228.006 kb on - strand, within ABIE53_000224 at 228.006 kb on - strand, within ABIE53_000224 at 228.018 kb on + strand, within ABIE53_000224 at 228.101 kb on - strand at 228.152 kb on + strand at 228.152 kb on + strand at 228.164 kb on + strand at 228.164 kb on + strand at 228.170 kb on + strand at 228.170 kb on + strand at 228.171 kb on - strand at 228.275 kb on + strand at 228.276 kb on - strand at 228.277 kb on + strand at 228.277 kb on + strand at 228.295 kb on - strand at 228.295 kb on - strand at 228.675 kb on + strand, within ABIE53_000225 at 228.675 kb on + strand, within ABIE53_000225 at 228.676 kb on - strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.690 kb on + strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.691 kb on - strand, within ABIE53_000225 at 228.755 kb on + strand, within ABIE53_000225 at 228.755 kb on + strand, within ABIE53_000225 at 228.756 kb on - strand, within ABIE53_000225 at 228.756 kb on - strand, within ABIE53_000225 at 228.867 kb on - strand at 228.919 kb on + strand at 228.920 kb on - strand at 228.920 kb on - strand at 228.949 kb on - strand at 228.949 kb on - strand at 228.949 kb on - strand at 229.028 kb on + strand at 229.028 kb on + strand at 229.028 kb on + strand at 229.028 kb on + strand at 229.029 kb on - strand at 229.029 kb on - strand at 229.122 kb on + strand at 229.122 kb on + strand at 229.123 kb on - strand at 229.123 kb on - strand at 229.180 kb on + strand at 229.180 kb on + strand at 229.180 kb on + strand at 229.180 kb on + strand at 229.180 kb on + strand at 229.180 kb on + strand at 229.180 kb on + strand at 229.181 kb on - strand at 229.192 kb on - strand at 229.359 kb on + strand at 229.387 kb on + strand at 229.387 kb on + strand at 229.390 kb on - strand at 229.390 kb on - strand at 229.400 kb on + strand at 229.432 kb on + strand at 229.433 kb on - strand at 229.433 kb on - strand at 229.533 kb on - strand at 229.533 kb on - strand at 229.584 kb on + strand, within ABIE53_000226 at 229.584 kb on + strand, within ABIE53_000226 at 229.585 kb on - strand, within ABIE53_000226 at 229.587 kb on - strand, within ABIE53_000226 at 229.691 kb on - strand, within ABIE53_000226 at 229.769 kb on - strand, within ABIE53_000226 at 229.778 kb on + strand, within ABIE53_000226 at 229.778 kb on + strand, within ABIE53_000226 at 229.779 kb on - strand, within ABIE53_000226 at 229.779 kb on - strand, within ABIE53_000226 at 229.788 kb on + strand, within ABIE53_000226 at 229.801 kb on - strand, within ABIE53_000226 at 229.810 kb on + strand, within ABIE53_000226 at 229.810 kb on + strand, within ABIE53_000226 at 229.810 kb on + strand, within ABIE53_000226 at 229.810 kb on + strand, within ABIE53_000226 at 229.811 kb on - strand, within ABIE53_000226 at 229.811 kb on - strand, within ABIE53_000226 at 229.811 kb on - strand, within ABIE53_000226 at 229.811 kb on - strand, within ABIE53_000226 at 229.811 kb on - strand, within ABIE53_000226 at 229.811 kb on - strand, within ABIE53_000226 at 229.814 kb on + strand, within ABIE53_000226 at 229.815 kb on - strand, within ABIE53_000226
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 227,285 + +0.6 227,285 + -3.2 227,285 + -0.7 227,285 + -0.8 227,285 + -0.5 227,285 + +1.1 227,285 + -0.7 227,285 + +1.3 227,285 + +0.5 227,286 - +3.9 227,286 - -0.3 227,286 - -1.0 227,286 - +1.3 227,286 - -1.1 227,286 - +1.0 227,286 - -0.5 227,286 - +0.6 227,286 - -1.0 227,286 - -0.8 227,333 + +1.8 227,333 + -0.5 227,334 - -0.4 227,334 - -1.1 227,371 + +1.9 227,371 + +2.3 227,372 - -0.2 227,372 - +1.3 227,416 + -1.1 227,417 - -0.7 227,417 - +0.0 227,460 + -0.8 227,460 + +0.0 227,461 - -0.5 227,468 + -0.2 227,468 + -0.7 227,468 + -0.5 227,468 + -0.0 227,468 + +0.2 227,469 - -1.7 227,469 - +0.2 227,514 + -1.7 227,515 - -1.0 227,559 + +0.3 227,559 + -0.8 227,559 + +1.3 227,559 + -0.7 227,560 - -0.5 227,560 - -0.3 227,658 - ABIE53_000223 0.39 -0.5 227,658 - ABIE53_000223 0.39 +0.3 227,674 + ABIE53_000223 0.45 +0.2 227,709 - ABIE53_000223 0.60 +1.3 227,745 + ABIE53_000223 0.75 +0.2 227,745 + ABIE53_000223 0.75 -0.2 227,746 - ABIE53_000223 0.75 -1.9 227,746 - ABIE53_000223 0.75 +2.0 227,746 - ABIE53_000223 0.75 -1.4 227,843 + ABIE53_000224 0.15 +0.3 227,843 + ABIE53_000224 0.15 +2.6 227,843 + ABIE53_000224 0.15 -1.4 227,843 + ABIE53_000224 0.15 -0.2 227,843 + ABIE53_000224 0.15 -1.3 227,843 + ABIE53_000224 0.15 +1.8 227,843 + ABIE53_000224 0.15 -0.5 227,843 + ABIE53_000224 0.15 -0.5 227,843 + ABIE53_000224 0.15 -1.1 227,844 - ABIE53_000224 0.16 +0.8 227,844 - ABIE53_000224 0.16 -1.7 227,844 - ABIE53_000224 0.16 +0.9 227,844 - ABIE53_000224 0.16 +2.3 227,844 - ABIE53_000224 0.16 +0.6 227,881 + ABIE53_000224 0.27 -0.1 227,881 + ABIE53_000224 0.27 -0.3 227,881 + ABIE53_000224 0.27 +1.5 227,881 + ABIE53_000224 0.27 -0.2 227,881 + ABIE53_000224 0.27 +0.0 227,882 - ABIE53_000224 0.27 +0.8 227,882 - ABIE53_000224 0.27 -0.4 227,882 - ABIE53_000224 0.27 +1.0 227,882 - ABIE53_000224 0.27 +0.3 227,882 - ABIE53_000224 0.27 +2.3 227,882 - ABIE53_000224 0.27 +0.3 227,882 - ABIE53_000224 0.27 -0.8 227,885 + ABIE53_000224 0.28 +1.0 227,885 + ABIE53_000224 0.28 -1.0 227,886 - ABIE53_000224 0.28 +1.8 227,886 - ABIE53_000224 0.28 -0.8 227,927 + ABIE53_000224 0.40 +2.3 227,927 + ABIE53_000224 0.40 +1.2 227,928 - ABIE53_000224 0.41 -1.6 227,970 - ABIE53_000224 0.53 -0.8 227,970 - ABIE53_000224 0.53 -0.8 227,970 - ABIE53_000224 0.53 +1.9 228,005 + ABIE53_000224 0.64 +0.2 228,005 + ABIE53_000224 0.64 -0.1 228,005 + ABIE53_000224 0.64 +0.8 228,006 - ABIE53_000224 0.64 +1.1 228,006 - ABIE53_000224 0.64 +0.9 228,006 - ABIE53_000224 0.64 -1.4 228,018 + ABIE53_000224 0.68 +0.0 228,101 - -0.7 228,152 + -0.6 228,152 + -1.4 228,164 + +2.5 228,164 + +0.3 228,170 + -1.1 228,170 + +0.3 228,171 - +1.3 228,275 + -0.6 228,276 - +1.8 228,277 + +0.3 228,277 + +1.3 228,295 - -0.0 228,295 - -1.7 228,675 + ABIE53_000225 0.70 -0.2 228,675 + ABIE53_000225 0.70 -0.2 228,676 - ABIE53_000225 0.70 +2.9 228,690 + ABIE53_000225 0.72 -0.7 228,690 + ABIE53_000225 0.72 -0.5 228,690 + ABIE53_000225 0.72 -1.2 228,690 + ABIE53_000225 0.72 -0.6 228,690 + ABIE53_000225 0.72 +0.8 228,690 + ABIE53_000225 0.72 +0.8 228,690 + ABIE53_000225 0.72 -1.1 228,690 + ABIE53_000225 0.72 +0.6 228,690 + ABIE53_000225 0.72 +0.3 228,691 - ABIE53_000225 0.72 -1.5 228,691 - ABIE53_000225 0.72 -2.4 228,691 - ABIE53_000225 0.72 +1.3 228,691 - ABIE53_000225 0.72 +0.8 228,691 - ABIE53_000225 0.72 -1.1 228,755 + ABIE53_000225 0.84 -0.5 228,755 + ABIE53_000225 0.84 +0.0 228,756 - ABIE53_000225 0.84 +2.3 228,756 - ABIE53_000225 0.84 +2.7 228,867 - -0.7 228,919 + +1.3 228,920 - -1.0 228,920 - +1.9 228,949 - +0.3 228,949 - +1.3 228,949 - +1.3 229,028 + -0.7 229,028 + -0.8 229,028 + +0.0 229,028 + -0.2 229,029 - -0.8 229,029 - -0.5 229,122 + +0.2 229,122 + -1.2 229,123 - -1.8 229,123 - +0.3 229,180 + +0.2 229,180 + +0.3 229,180 + +0.4 229,180 + +0.7 229,180 + -1.0 229,180 + +0.0 229,180 + -0.5 229,181 - -2.0 229,192 - +2.3 229,359 + +0.8 229,387 + +0.2 229,387 + -0.5 229,390 - -0.8 229,390 - -0.7 229,400 + +0.2 229,432 + +1.3 229,433 - +0.5 229,433 - -0.0 229,533 - -0.6 229,533 - -1.1 229,584 + ABIE53_000226 0.10 +2.6 229,584 + ABIE53_000226 0.10 -1.1 229,585 - ABIE53_000226 0.10 -2.0 229,587 - ABIE53_000226 0.11 -1.6 229,691 - ABIE53_000226 0.31 -1.0 229,769 - ABIE53_000226 0.47 -0.8 229,778 + ABIE53_000226 0.48 +0.5 229,778 + ABIE53_000226 0.48 -0.7 229,779 - ABIE53_000226 0.49 +0.1 229,779 - ABIE53_000226 0.49 -0.2 229,788 + ABIE53_000226 0.50 +2.2 229,801 - ABIE53_000226 0.53 -2.7 229,810 + ABIE53_000226 0.55 -1.8 229,810 + ABIE53_000226 0.55 +0.4 229,810 + ABIE53_000226 0.55 -1.9 229,810 + ABIE53_000226 0.55 -0.8 229,811 - ABIE53_000226 0.55 +1.1 229,811 - ABIE53_000226 0.55 +0.8 229,811 - ABIE53_000226 0.55 +2.2 229,811 - ABIE53_000226 0.55 +1.1 229,811 - ABIE53_000226 0.55 -0.5 229,811 - ABIE53_000226 0.55 -0.6 229,814 + ABIE53_000226 0.55 -0.6 229,815 - ABIE53_000226 0.56 -1.8
Or see this region's nucleotide sequence