Strain Fitness in Pantoea sp. MT58 around IAI47_18235

Experiment: copper (II) chloride 5 uM, aerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 5 uM, aerobic
3,880,058	+		IAI47_18230	0.58	-0.1
3,880,059	-		IAI47_18230	0.59	-0.6
3,880,059	-		IAI47_18230	0.59	+2.2
3,880,059	-		IAI47_18230	0.59	-0.7
3,880,059	-		IAI47_18230	0.59	+0.4
3,880,059	-		IAI47_18230	0.59	+1.6
3,880,073	+		IAI47_18230	0.59	+0.7
3,880,073	+		IAI47_18230	0.59	-0.2
3,880,073	+		IAI47_18230	0.59	+0.7
3,880,074	-		IAI47_18230	0.59	-0.8
3,880,074	-		IAI47_18230	0.59	-0.0
3,880,148	+		IAI47_18230	0.63	+0.2
3,880,148	+		IAI47_18230	0.63	-0.3
3,880,148	+		IAI47_18230	0.63	+0.5
3,880,148	+		IAI47_18230	0.63	-1.5
3,880,148	+		IAI47_18230	0.63	+0.1
3,880,148	+		IAI47_18230	0.63	+0.7
3,880,149	-		IAI47_18230	0.63	-0.1
3,880,149	-		IAI47_18230	0.63	-0.3
3,880,149	-		IAI47_18230	0.63	-0.0
3,880,149	-		IAI47_18230	0.63	-0.2
3,880,149	-		IAI47_18230	0.63	+1.1
3,880,149	-		IAI47_18230	0.63	+0.1
3,880,149	-		IAI47_18230	0.63	-0.1
3,880,149	-		IAI47_18230	0.63	+0.6
3,880,149	-		IAI47_18230	0.63	+0.3
3,880,202	+		IAI47_18230	0.65	-0.3
3,880,202	+		IAI47_18230	0.65	+0.6
3,880,202	+		IAI47_18230	0.65	+0.4
3,880,202	+		IAI47_18230	0.65	+0.2
3,880,203	-		IAI47_18230	0.65	-0.9
3,880,203	-		IAI47_18230	0.65	-0.1
3,880,203	-		IAI47_18230	0.65	-1.2
3,880,275	-		IAI47_18230	0.68	+0.2
3,880,293	+		IAI47_18230	0.69	+0.2
3,880,294	-		IAI47_18230	0.69	-0.3
3,880,294	-		IAI47_18230	0.69	+0.4
3,880,349	+		IAI47_18230	0.72	+2.1
3,880,349	+		IAI47_18230	0.72	-0.3
3,880,349	+		IAI47_18230	0.72	+0.4
3,880,350	-		IAI47_18230	0.72	+0.3
3,880,350	-		IAI47_18230	0.72	+2.7
3,880,350	-		IAI47_18230	0.72	-0.6
3,880,350	-		IAI47_18230	0.72	-0.0
3,880,350	-		IAI47_18230	0.72	+0.2
3,880,354	+		IAI47_18230	0.72	+0.5
3,880,354	+		IAI47_18230	0.72	-0.8
3,880,355	-		IAI47_18230	0.72	-1.0
3,880,355	-		IAI47_18230	0.72	+0.8
3,880,355	-		IAI47_18230	0.72	+0.4
3,880,355	-		IAI47_18230	0.72	+0.4
3,880,355	-		IAI47_18230	0.72	+0.0
3,880,408	+		IAI47_18230	0.74	-2.4
3,880,408	+		IAI47_18230	0.74	+0.9
3,880,408	+		IAI47_18230	0.74	+0.1
3,880,409	-		IAI47_18230	0.75	+0.2
3,880,409	-		IAI47_18230	0.75	+0.7
3,880,466	+		IAI47_18230	0.77	-0.8
3,880,466	+		IAI47_18230	0.77	+0.3
3,880,467	-		IAI47_18230	0.77	+0.4
3,880,562	+		IAI47_18230	0.82	+0.0
3,880,562	+		IAI47_18230	0.82	-0.4
3,880,742	+		IAI47_18230	0.90	+0.9
3,880,742	+		IAI47_18230	0.90	-0.6
3,880,742	+		IAI47_18230	0.90	-1.8
3,880,742	+		IAI47_18230	0.90	+1.2
3,880,742	+		IAI47_18230	0.90	+0.5
3,880,743	-		IAI47_18230	0.90	+0.3
3,880,743	-		IAI47_18230	0.90	-1.2
3,880,753	+				-1.5
3,880,753	+				-0.1
3,880,753	+				-0.6
3,880,753	+				+0.8
3,880,754	-				-0.2
3,880,754	-				+0.7
3,880,755	+				-0.9
3,880,755	+				-0.4
3,880,756	-				+0.5
3,880,805	+				-2.1
3,880,820	+				+0.1
3,880,820	+				+0.0
3,880,820	+				+0.1
3,880,820	+				-1.0
3,880,820	+				-0.5
3,880,820	+				+0.1
3,880,820	+				-0.1
3,880,820	+				+1.1
3,880,820	+				+0.7
3,880,821	-				-1.1
3,880,821	-				-0.8
3,880,821	-				+0.3
3,880,821	-				-1.0
3,880,821	-				+0.1
3,880,847	+				-2.1
3,880,848	-				+0.7
3,880,848	-				-1.5
3,880,866	+				-0.4
3,880,866	+				-1.3
3,880,866	+				+0.7
3,880,866	+				+0.1
3,880,867	-				+0.7
3,880,867	-				+0.1
3,880,867	-				+1.6
3,880,867	-				+0.5
3,880,867	-				-0.0
3,880,867	-				+0.6
3,881,148	-		IAI47_18235	0.15	+0.4
3,881,148	-		IAI47_18235	0.15	-0.3
3,881,172	+		IAI47_18235	0.17	+0.8
3,881,172	+		IAI47_18235	0.17	-0.8
3,881,172	+		IAI47_18235	0.17	-0.7
3,881,172	+		IAI47_18235	0.17	+0.6
3,881,172	+		IAI47_18235	0.17	-0.0
3,881,172	+		IAI47_18235	0.17	+0.7
3,881,172	+		IAI47_18235	0.17	+1.0
3,881,173	-		IAI47_18235	0.17	+0.8
3,881,173	-		IAI47_18235	0.17	+0.6
3,881,173	-		IAI47_18235	0.17	-0.3
3,881,220	-		IAI47_18235	0.21	-0.3
3,881,289	+		IAI47_18235	0.27	+0.0
3,881,289	+		IAI47_18235	0.27	-0.5
3,881,289	+		IAI47_18235	0.27	-0.2
3,881,290	-		IAI47_18235	0.27	+0.8
3,881,290	-		IAI47_18235	0.27	+0.1
3,881,420	+		IAI47_18235	0.38	-0.8
3,881,420	+		IAI47_18235	0.38	+1.3
3,881,420	+		IAI47_18235	0.38	-0.3
3,881,420	+		IAI47_18235	0.38	+0.2
3,881,421	-		IAI47_18235	0.38	+0.7
3,881,442	+		IAI47_18235	0.40	+2.1
3,881,442	+		IAI47_18235	0.40	-1.2
3,881,442	+		IAI47_18235	0.40	+0.9
3,881,442	+		IAI47_18235	0.40	+0.2
3,881,442	+		IAI47_18235	0.40	-0.5
3,881,442	+		IAI47_18235	0.40	+0.3
3,881,442	+		IAI47_18235	0.40	+1.6
3,881,442	+		IAI47_18235	0.40	+0.8
3,881,442	+		IAI47_18235	0.40	+0.8
3,881,442	+		IAI47_18235	0.40	+0.1
3,881,442	+		IAI47_18235	0.40	+0.7
3,881,442	+		IAI47_18235	0.40	+0.4
3,881,442	+		IAI47_18235	0.40	-0.5
3,881,442	+		IAI47_18235	0.40	-0.5
3,881,442	+		IAI47_18235	0.40	-1.1
3,881,442	+		IAI47_18235	0.40	-0.2
3,881,442	+		IAI47_18235	0.40	+0.1
3,881,443	-		IAI47_18235	0.40	+1.5
3,881,443	-		IAI47_18235	0.40	+1.8
3,881,443	-		IAI47_18235	0.40	+0.8
3,881,443	-		IAI47_18235	0.40	-0.5
3,881,443	-		IAI47_18235	0.40	+0.3
3,881,443	-		IAI47_18235	0.40	+0.3
3,881,443	-		IAI47_18235	0.40	+0.2
3,881,443	-		IAI47_18235	0.40	-0.7
3,881,443	-		IAI47_18235	0.40	-1.3
3,881,443	-		IAI47_18235	0.40	-0.2
3,881,443	-		IAI47_18235	0.40	-2.5
3,881,443	-		IAI47_18235	0.40	+1.2
3,881,443	-		IAI47_18235	0.40	-1.8
3,881,443	-		IAI47_18235	0.40	+0.0
3,881,443	-		IAI47_18235	0.40	+0.5
3,881,443	-		IAI47_18235	0.40	+1.1
3,881,443	-		IAI47_18235	0.40	+1.0
3,881,443	-		IAI47_18235	0.40	-1.5
3,881,443	-		IAI47_18235	0.40	+0.5
3,881,451	+		IAI47_18235	0.41	-1.5
3,881,451	+		IAI47_18235	0.41	+0.9
3,881,451	+		IAI47_18235	0.41	+1.3
3,881,451	+		IAI47_18235	0.41	+0.3
3,881,452	-		IAI47_18235	0.41	+0.8
3,881,452	-		IAI47_18235	0.41	+0.4
3,881,452	-		IAI47_18235	0.41	+0.2
3,881,551	+		IAI47_18235	0.49	-2.9
3,881,551	+		IAI47_18235	0.49	+0.3
3,881,551	+		IAI47_18235	0.49	+0.3
3,881,551	+		IAI47_18235	0.49	+0.2
3,881,551	+		IAI47_18235	0.49	+0.9
3,881,552	-		IAI47_18235	0.50	-1.8
3,881,552	-		IAI47_18235	0.50	-0.3
3,881,552	-		IAI47_18235	0.50	-0.0
3,881,577	+		IAI47_18235	0.52	+0.2
3,881,577	+		IAI47_18235	0.52	-0.3
3,881,584	+		IAI47_18235	0.52	+0.1
3,881,584	+		IAI47_18235	0.52	-0.8
3,881,584	+		IAI47_18235	0.52	+1.3
3,881,585	-		IAI47_18235	0.52	-1.2
3,881,818	+		IAI47_18235	0.72	+1.0
3,881,818	+		IAI47_18235	0.72	+1.5
3,881,819	-		IAI47_18235	0.73	-0.1
3,881,838	+		IAI47_18235	0.74	-0.3
3,881,839	-		IAI47_18235	0.74	+1.2
3,881,864	+		IAI47_18235	0.76	+1.0
3,881,864	+		IAI47_18235	0.76	+0.2
3,881,865	-		IAI47_18235	0.76	+0.2
3,881,877	+		IAI47_18235	0.77	+0.9
3,881,878	-		IAI47_18235	0.78	+0.1
3,881,878	-		IAI47_18235	0.78	+0.9
3,881,940	-		IAI47_18235	0.83	-0.2
3,881,940	-		IAI47_18235	0.83	-0.6
3,881,940	-		IAI47_18235	0.83	-0.4
3,881,996	+		IAI47_18235	0.88	+2.4
3,881,997	-		IAI47_18235	0.88	-0.2
3,881,997	-		IAI47_18235	0.88	+1.1
3,881,997	-		IAI47_18235	0.88	+0.3
3,882,048	+				-0.1
3,882,048	+				+0.1
3,882,048	+				-2.0
3,882,048	+				+0.0
3,882,048	+				+0.2
3,882,048	+				-1.1
3,882,048	+				-1.0
3,882,048	+				-0.5
3,882,049	-				-0.4
3,882,049	-				+1.1
3,882,049	-				+0.1
3,882,049	-				+1.0
3,882,051	+				+1.0
3,882,051	+				-0.8
3,882,051	+				+0.2
3,882,051	+				-0.9
3,882,052	-				-0.2
3,882,084	+				-0.2
3,882,085	-				+3.3
3,882,085	-				-0.2
3,882,085	-				+1.2
3,882,122	+				+0.3
3,882,123	-				+0.4
3,882,123	-				+0.3
3,882,136	+				-0.4
3,882,136	+				+1.8
3,882,137	-				-1.1
3,882,137	-				-0.8
3,882,137	-				-0.5
3,882,137	-				-0.3
3,882,139	+				+0.4
3,882,139	+				-1.2
3,882,139	+				+0.9
3,882,140	-				+0.2
3,882,140	-				-0.5
3,882,140	-				-0.8
3,882,140	-				-2.1
3,882,151	+				+0.3
3,882,151	+				+0.2
3,882,152	-				+0.8
3,882,152	-				-0.3
3,882,152	-				-0.1
3,882,152	-				+0.0
3,882,201	-				+0.2
3,882,201	-				+0.3
3,882,224	+				-1.0
3,882,225	-				+0.7
3,882,225	-				+2.0
3,882,225	-				+1.1
3,882,244	+				-0.2
3,882,245	-				-1.1
3,882,325	+		IAI47_18240	0.15	+0.0
3,882,325	+		IAI47_18240	0.15	-0.8
3,882,477	-		IAI47_18240	0.37	-0.7
3,882,481	+		IAI47_18240	0.37	-0.8
3,882,481	+		IAI47_18240	0.37	+0.2
3,882,651	-		IAI47_18240	0.62	-1.4
3,882,804	+		IAI47_18240	0.83	-3.2
3,882,804	+		IAI47_18240	0.83	-0.7
3,882,805	-		IAI47_18240	0.83	+0.7
3,882,898	-				-0.6
3,882,945	+				-0.1
3,882,946	-				-0.4
3,882,946	-				+1.6
3,882,946	-				+0.7