Strain Fitness in Pantoea sp. MT58 around IAI47_15670

Experiment: copper (II) chloride 5 uM, aerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 5 uM, aerobic
3,303,041	+		IAI47_15660	0.48	-1.6
3,303,041	+		IAI47_15660	0.48	-0.5
3,303,041	+		IAI47_15660	0.48	-1.4
3,303,042	-		IAI47_15660	0.48	-1.2
3,303,042	-		IAI47_15660	0.48	-0.9
3,303,042	-		IAI47_15660	0.48	-1.1
3,303,060	-		IAI47_15660	0.51	-0.7
3,303,107	+		IAI47_15660	0.56	-0.1
3,303,107	+		IAI47_15660	0.56	+0.7
3,303,107	+		IAI47_15660	0.56	-3.8
3,303,108	-		IAI47_15660	0.56	-0.6
3,303,108	-		IAI47_15660	0.56	+0.5
3,303,221	+		IAI47_15660	0.69	+0.1
3,303,221	+		IAI47_15660	0.69	-0.5
3,303,222	-		IAI47_15660	0.69	-0.9
3,303,222	-		IAI47_15660	0.69	+0.1
3,303,222	-		IAI47_15660	0.69	+1.5
3,303,222	-		IAI47_15660	0.69	-2.6
3,303,247	+		IAI47_15660	0.72	+0.2
3,303,247	+		IAI47_15660	0.72	-1.1
3,303,248	-		IAI47_15660	0.73	-0.2
3,303,248	-		IAI47_15660	0.73	-0.6
3,303,415	+				-1.7
3,303,437	+				-1.4
3,303,480	+				+0.5
3,303,480	+				+0.1
3,303,480	+				+1.0
3,303,480	+				-0.4
3,303,480	+				+0.8
3,303,480	+				-0.1
3,303,481	-				-0.7
3,303,481	-				+0.1
3,303,505	+				-1.3
3,303,505	+				+0.1
3,303,505	+				-0.8
3,303,530	-				+0.1
3,303,593	+		IAI47_15665	0.17	-0.3
3,303,593	+		IAI47_15665	0.17	-0.7
3,303,593	+		IAI47_15665	0.17	-1.3
3,303,594	-		IAI47_15665	0.17	-1.0
3,303,594	-		IAI47_15665	0.17	-0.0
3,303,594	-		IAI47_15665	0.17	-1.1
3,303,594	-		IAI47_15665	0.17	-1.0
3,303,594	-		IAI47_15665	0.17	-0.5
3,303,610	+		IAI47_15665	0.21	-0.4
3,303,650	+		IAI47_15665	0.31	-0.6
3,303,651	-		IAI47_15665	0.32	-1.2
3,303,664	+		IAI47_15665	0.35	+0.3
3,303,664	+		IAI47_15665	0.35	+0.5
3,303,665	-		IAI47_15665	0.35	+1.1
3,303,665	-		IAI47_15665	0.35	-0.4
3,303,668	+		IAI47_15665	0.36	-1.5
3,303,668	+		IAI47_15665	0.36	-1.9
3,303,668	+		IAI47_15665	0.36	-0.6
3,303,668	+		IAI47_15665	0.36	-0.8
3,303,668	+		IAI47_15665	0.36	-0.7
3,303,669	-		IAI47_15665	0.36	-2.6
3,303,669	-		IAI47_15665	0.36	-0.7
3,303,669	-		IAI47_15665	0.36	-2.3
3,303,669	-		IAI47_15665	0.36	-0.9
3,303,669	-		IAI47_15665	0.36	+0.4
3,303,670	+		IAI47_15665	0.37	+0.0
3,303,670	+		IAI47_15665	0.37	-0.9
3,303,671	-		IAI47_15665	0.37	-0.6
3,303,701	+		IAI47_15665	0.45	-0.7
3,303,701	+		IAI47_15665	0.45	-2.7
3,303,701	+		IAI47_15665	0.45	-0.6
3,303,701	+		IAI47_15665	0.45	+0.3
3,303,701	+		IAI47_15665	0.45	+1.2
3,303,701	+		IAI47_15665	0.45	-0.2
3,303,701	+		IAI47_15665	0.45	+0.9
3,303,701	+		IAI47_15665	0.45	+1.2
3,303,701	+		IAI47_15665	0.45	-0.8
3,303,702	-		IAI47_15665	0.45	+1.6
3,303,702	-		IAI47_15665	0.45	-0.3
3,303,702	-		IAI47_15665	0.45	-0.3
3,303,702	-		IAI47_15665	0.45	-2.4
3,303,702	-		IAI47_15665	0.45	-0.3
3,303,702	-		IAI47_15665	0.45	-1.7
3,303,702	-		IAI47_15665	0.45	-0.1
3,303,778	+		IAI47_15665	0.65	-1.8
3,303,778	+		IAI47_15665	0.65	-0.4
3,303,779	-		IAI47_15665	0.65	-0.1
3,303,779	-		IAI47_15665	0.65	-0.8
3,303,779	-		IAI47_15665	0.65	+0.5
3,303,779	-		IAI47_15665	0.65	-0.8
3,303,780	+		IAI47_15665	0.66	+1.1
3,303,780	+		IAI47_15665	0.66	-0.9
3,303,781	-		IAI47_15665	0.66	-0.9
3,303,781	-		IAI47_15665	0.66	+0.3
3,303,781	-		IAI47_15665	0.66	-2.2
3,303,781	-		IAI47_15665	0.66	-0.1
3,303,781	-		IAI47_15665	0.66	+0.8
3,303,783	+		IAI47_15665	0.66	-2.1
3,303,783	+		IAI47_15665	0.66	-0.6
3,303,783	+		IAI47_15665	0.66	+1.7
3,303,783	+		IAI47_15665	0.66	+0.0
3,303,783	+		IAI47_15665	0.66	-1.1
3,303,783	+		IAI47_15665	0.66	-0.8
3,303,783	+		IAI47_15665	0.66	-0.7
3,303,784	-		IAI47_15665	0.67	-1.0
3,303,784	-		IAI47_15665	0.67	-0.9
3,303,784	-		IAI47_15665	0.67	-1.7
3,303,784	-		IAI47_15665	0.67	-0.0
3,303,787	+		IAI47_15665	0.67	+0.2
3,303,787	+		IAI47_15665	0.67	-1.4
3,303,788	-		IAI47_15665	0.68	-1.0
3,303,788	-		IAI47_15665	0.68	+1.3
3,303,797	+		IAI47_15665	0.70	-0.8
3,303,797	+		IAI47_15665	0.70	-1.6
3,303,797	+		IAI47_15665	0.70	-1.6
3,303,797	+		IAI47_15665	0.70	-0.2
3,303,798	-		IAI47_15665	0.70	+0.7
3,303,798	-		IAI47_15665	0.70	-2.3
3,303,798	-		IAI47_15665	0.70	-3.1
3,303,798	-		IAI47_15665	0.70	-0.9
3,303,798	-		IAI47_15665	0.70	-1.9
3,303,798	-		IAI47_15665	0.70	-1.0
3,303,848	+		IAI47_15665	0.83	-2.0
3,303,848	+		IAI47_15665	0.83	-1.6
3,303,924	+				-0.4
3,303,979	-				+0.1
3,303,979	-				-2.5
3,304,034	-				+1.5
3,304,061	+				+1.1
3,304,061	+				+0.7
3,304,061	+				+0.6
3,304,061	+				+1.7
3,304,061	+				-0.5
3,304,062	-				-0.0
3,304,062	-				+1.0
3,304,062	-				-0.4
3,304,119	-		IAI47_15670	0.14	-1.5
3,304,176	+		IAI47_15670	0.20	-1.2
3,304,176	+		IAI47_15670	0.20	+1.1
3,304,188	+		IAI47_15670	0.21	+0.3
3,304,189	-		IAI47_15670	0.21	+1.3
3,304,189	-		IAI47_15670	0.21	-0.0
3,304,198	+		IAI47_15670	0.22	+0.6
3,304,198	+		IAI47_15670	0.22	+0.1
3,304,198	+		IAI47_15670	0.22	+0.6
3,304,198	+		IAI47_15670	0.22	-1.9
3,304,199	-		IAI47_15670	0.22	+0.2
3,304,199	-		IAI47_15670	0.22	+0.0
3,304,199	-		IAI47_15670	0.22	+1.2
3,304,215	+		IAI47_15670	0.23	+0.7
3,304,215	+		IAI47_15670	0.23	-1.4
3,304,215	+		IAI47_15670	0.23	+0.0
3,304,216	-		IAI47_15670	0.24	+0.7
3,304,218	+		IAI47_15670	0.24	-0.6
3,304,218	+		IAI47_15670	0.24	+1.3
3,304,218	+		IAI47_15670	0.24	-1.6
3,304,240	+		IAI47_15670	0.26	+0.7
3,304,274	+		IAI47_15670	0.29	-0.6
3,304,274	+		IAI47_15670	0.29	-1.1
3,304,289	+		IAI47_15670	0.31	-0.1
3,304,290	-		IAI47_15670	0.31	+0.3
3,304,293	-		IAI47_15670	0.31	-0.4
3,304,293	-		IAI47_15670	0.31	-0.1
3,304,316	+		IAI47_15670	0.33	-0.6
3,304,317	-		IAI47_15670	0.34	-1.8
3,304,317	-		IAI47_15670	0.34	+0.1
3,304,318	+		IAI47_15670	0.34	+0.6
3,304,318	+		IAI47_15670	0.34	+0.0
3,304,319	-		IAI47_15670	0.34	+0.8
3,304,324	+		IAI47_15670	0.34	-1.2
3,304,324	+		IAI47_15670	0.34	-0.1
3,304,324	+		IAI47_15670	0.34	+0.3
3,304,325	-		IAI47_15670	0.34	+1.9
3,304,325	-		IAI47_15670	0.34	+0.8
3,304,325	-		IAI47_15670	0.34	-0.4
3,304,325	-		IAI47_15670	0.34	-0.8
3,304,325	-		IAI47_15670	0.34	+1.8
3,304,325	-		IAI47_15670	0.34	+0.2
3,304,399	+		IAI47_15670	0.42	+0.5
3,304,418	+		IAI47_15670	0.43	-2.6
3,304,419	-		IAI47_15670	0.44	+0.9
3,304,422	+		IAI47_15670	0.44	+0.1
3,304,422	+		IAI47_15670	0.44	+0.3
3,304,423	-		IAI47_15670	0.44	-0.9
3,304,423	-		IAI47_15670	0.44	+0.7
3,304,434	+		IAI47_15670	0.45	-0.0
3,304,435	-		IAI47_15670	0.45	+1.8
3,304,435	-		IAI47_15670	0.45	+0.1
3,304,435	-		IAI47_15670	0.45	-0.9
3,304,452	+		IAI47_15670	0.47	-0.5
3,304,453	-		IAI47_15670	0.47	-0.7
3,304,474	+		IAI47_15670	0.49	-1.7
3,304,474	+		IAI47_15670	0.49	+0.9
3,304,475	-		IAI47_15670	0.49	-0.6
3,304,475	-		IAI47_15670	0.49	+0.7
3,304,537	+		IAI47_15670	0.55	-0.8
3,304,537	+		IAI47_15670	0.55	+0.1
3,304,537	+		IAI47_15670	0.55	-0.1
3,304,538	-		IAI47_15670	0.55	+0.8
3,304,538	-		IAI47_15670	0.55	+1.2
3,304,538	-		IAI47_15670	0.55	-0.6
3,304,600	+		IAI47_15670	0.61	+0.7
3,304,628	-		IAI47_15670	0.64	+1.4
3,304,657	+		IAI47_15670	0.67	-0.4
3,304,658	-		IAI47_15670	0.67	+0.4
3,304,658	-		IAI47_15670	0.67	-2.6
3,304,658	-		IAI47_15670	0.67	+0.2
3,304,682	-		IAI47_15670	0.70	-0.2
3,304,685	-		IAI47_15670	0.70	-0.0
3,304,685	-		IAI47_15670	0.70	+1.2
3,304,709	+		IAI47_15670	0.72	-0.2
3,304,719	+		IAI47_15670	0.73	+2.3
3,304,719	+		IAI47_15670	0.73	-1.5
3,304,747	-		IAI47_15670	0.76	+0.2
3,304,753	+		IAI47_15670	0.77	+0.4
3,304,754	-		IAI47_15670	0.77	-0.8
3,304,754	-		IAI47_15670	0.77	+0.5
3,304,754	-		IAI47_15670	0.77	+1.8
3,304,760	+		IAI47_15670	0.77	+1.5
3,304,760	+		IAI47_15670	0.77	+0.0
3,304,761	-		IAI47_15670	0.77	+0.2
3,304,761	-		IAI47_15670	0.77	+0.5
3,304,769	-		IAI47_15670	0.78	-0.1
3,304,772	-		IAI47_15670	0.78	-0.1
3,304,814	+		IAI47_15670	0.83	+0.7
3,304,906	+				+0.5
3,304,906	+				+1.3
3,304,906	+				-0.1
3,304,906	+				-0.8
3,304,906	+				-2.0
3,304,907	-				+0.2
3,304,910	+				-0.2
3,304,910	+				-0.5
3,304,911	-				-0.0
3,304,949	-				+0.9
3,304,949	-				-0.3
3,304,949	-				+1.2
3,304,952	+				+0.2
3,304,952	+				-1.7
3,304,953	-				+1.5
3,304,953	-				-0.3
3,304,966	+				+1.0
3,304,979	+				+0.4
3,304,979	+				-0.1
3,304,980	-				-0.1
3,304,982	-				-0.1
3,305,005	+				-0.3
3,305,043	-				+2.2
3,305,088	+				+0.4
3,305,095	-				-0.1
3,305,095	-				+0.5
3,305,113	+				-3.0
3,305,114	-				+0.5
3,305,120	+				-0.7
3,305,128	+				-0.2
3,305,146	+				+0.2
3,305,147	-				+0.5
3,305,177	-				-1.7
3,305,186	+				-0.2
3,305,192	-				+0.3
3,305,209	+				+0.5
3,305,212	+				+0.5
3,305,213	-				+0.0
3,305,213	-				-0.2
3,305,213	-				+0.9
3,305,219	+				+0.8
3,305,222	+				+1.2
3,305,222	+				+0.5
3,305,222	+				-0.5
3,305,222	+				+0.2
3,305,222	+				+1.3
3,305,222	+				+0.5
3,305,223	-				-0.8
3,305,223	-				-1.0
3,305,223	-				+1.4
3,305,226	+				-0.2
3,305,226	+				-0.1
3,305,226	+				+0.7
3,305,227	-				-0.5
3,305,227	-				+0.0
3,305,253	+				+2.2
3,305,253	+				-1.0
3,305,253	+				+0.2
3,305,253	+				+0.9
3,305,254	-				-0.3
3,305,254	-				+1.4
3,305,283	+				-0.0
3,305,283	+				-1.8
3,305,284	-				-0.6
3,305,284	-				-0.3
3,305,284	-				+1.5
3,305,284	-				+0.1
3,305,319	+				+0.8
3,305,341	+				-0.2
3,305,341	+				+0.8
3,305,342	-				+0.3
3,305,398	-				+0.2
3,305,398	-				+0.4
3,305,423	+				-0.8
3,305,424	-				-0.0
3,305,424	-				+0.4
3,305,424	-				+0.8
3,305,441	+				-0.3
3,305,451	+				-0.5
3,305,451	+				+0.3
3,305,451	+				+0.4
3,305,452	-				-0.6
3,305,452	-				-1.0
3,305,452	-				-0.2
3,305,463	+				+0.1
3,305,464	-				+0.7
3,305,464	-				+1.3
3,305,464	-				+1.2
3,305,476	+				-0.4
3,305,476	+				-0.3
3,305,477	-				+1.7
3,305,477	-				-0.6
3,305,489	+				-1.9
3,305,490	-				+0.5
3,305,490	-				-1.5
3,305,500	+		IAI47_15675	0.11	+1.2
3,305,501	-		IAI47_15675	0.11	+1.3
3,305,501	-		IAI47_15675	0.11	+1.8
3,305,521	+		IAI47_15675	0.14	-1.1
3,305,521	+		IAI47_15675	0.14	-0.8
3,305,557	+		IAI47_15675	0.19	-0.6
3,305,557	+		IAI47_15675	0.19	+1.0
3,305,557	+		IAI47_15675	0.19	-0.1
3,305,558	-		IAI47_15675	0.19	+0.2
3,305,558	-		IAI47_15675	0.19	+1.3
3,305,558	-		IAI47_15675	0.19	-1.4
3,305,558	-		IAI47_15675	0.19	+0.2
3,305,559	+		IAI47_15675	0.19	+1.0
3,305,559	+		IAI47_15675	0.19	+1.0
3,305,559	+		IAI47_15675	0.19	+0.4
3,305,559	+		IAI47_15675	0.19	+0.2
3,305,559	+		IAI47_15675	0.19	+0.3
3,305,559	+		IAI47_15675	0.19	+1.4
3,305,559	+		IAI47_15675	0.19	-0.4
3,305,560	-		IAI47_15675	0.19	-0.0
3,305,560	-		IAI47_15675	0.19	-1.9
3,305,619	+		IAI47_15675	0.27	-0.3
3,305,620	-		IAI47_15675	0.27	+0.5
3,305,620	-		IAI47_15675	0.27	-0.8
3,305,624	+		IAI47_15675	0.27	-1.0
3,305,624	+		IAI47_15675	0.27	+0.1
3,305,624	+		IAI47_15675	0.27	+0.1
3,305,624	+		IAI47_15675	0.27	-0.3
3,305,624	+		IAI47_15675	0.27	+1.5
3,305,625	-		IAI47_15675	0.27	-0.7
3,305,625	-		IAI47_15675	0.27	+0.1
3,305,625	-		IAI47_15675	0.27	-0.5
3,305,637	+		IAI47_15675	0.29	-1.3
3,305,637	+		IAI47_15675	0.29	-0.4
3,305,637	+		IAI47_15675	0.29	-0.7
3,305,677	+		IAI47_15675	0.34	-0.2
3,305,844	-		IAI47_15675	0.56	+0.2
3,305,859	+		IAI47_15675	0.58	-0.4
3,305,860	-		IAI47_15675	0.58	+0.1
3,305,860	-		IAI47_15675	0.58	-0.9
3,305,869	+		IAI47_15675	0.59	-0.4
3,305,870	-		IAI47_15675	0.59	+0.7
3,305,870	-		IAI47_15675	0.59	+0.3
3,305,870	-		IAI47_15675	0.59	-0.1
3,305,872	+		IAI47_15675	0.59	-1.5
3,305,872	+		IAI47_15675	0.59	-0.9
3,305,872	+		IAI47_15675	0.59	-0.0
3,305,872	+		IAI47_15675	0.59	+0.2
3,305,872	+		IAI47_15675	0.59	-1.3
3,305,872	+		IAI47_15675	0.59	+2.2
3,305,872	+		IAI47_15675	0.59	-0.1
3,305,872	+		IAI47_15675	0.59	+1.1
3,305,873	-		IAI47_15675	0.60	+0.6
3,305,873	-		IAI47_15675	0.60	-1.4
3,305,873	-		IAI47_15675	0.60	-0.2
3,305,873	-		IAI47_15675	0.60	+0.1
3,305,873	-		IAI47_15675	0.60	-0.4
3,305,958	+		IAI47_15675	0.71	+0.2
3,305,959	-		IAI47_15675	0.71	-0.1