Strain Fitness in Rahnella sp. WP5 around EX31_RS19035

Experiment: L-Glutamine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19030 and EX31_RS19035 are separated by 193 nucleotidesEX31_RS19035 and EX31_RS19040 overlap by 1 nucleotides EX31_RS19030: EX31_RS19030 - 5'-nucleotidase, lipoprotein e(P4) family, at 396,672 to 397,478 _RS19030 EX31_RS19035: EX31_RS19035 - ABC transporter ATP-binding protein, at 397,672 to 398,511 _RS19035 EX31_RS19040: EX31_RS19040 - iron ABC transporter permease, at 398,511 to 399,593 _RS19040 Position (kb) 397 398 399Strain fitness (log2 ratio) -2 -1 0 1 2 3at 396.706 kb on + strandat 396.707 kb on - strandat 396.829 kb on - strand, within EX31_RS19030at 396.839 kb on + strand, within EX31_RS19030at 396.839 kb on + strand, within EX31_RS19030at 396.929 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.939 kb on + strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 396.940 kb on - strand, within EX31_RS19030at 397.050 kb on + strand, within EX31_RS19030at 397.050 kb on + strand, within EX31_RS19030at 397.050 kb on + strand, within EX31_RS19030at 397.050 kb on + strand, within EX31_RS19030at 397.050 kb on + strand, within EX31_RS19030at 397.050 kb on + strand, within EX31_RS19030at 397.051 kb on - strand, within EX31_RS19030at 397.051 kb on - strand, within EX31_RS19030at 397.080 kb on + strand, within EX31_RS19030at 397.080 kb on + strand, within EX31_RS19030at 397.080 kb on + strand, within EX31_RS19030at 397.080 kb on + strand, within EX31_RS19030at 397.080 kb on + strand, within EX31_RS19030at 397.081 kb on - strand, within EX31_RS19030at 397.081 kb on - strand, within EX31_RS19030at 397.081 kb on - strand, within EX31_RS19030at 397.108 kb on - strand, within EX31_RS19030at 397.127 kb on + strand, within EX31_RS19030at 397.127 kb on + strand, within EX31_RS19030at 397.127 kb on + strand, within EX31_RS19030at 397.128 kb on - strand, within EX31_RS19030at 397.128 kb on - strand, within EX31_RS19030at 397.128 kb on - strand, within EX31_RS19030at 397.185 kb on - strand, within EX31_RS19030at 397.245 kb on + strand, within EX31_RS19030at 397.245 kb on + strand, within EX31_RS19030at 397.245 kb on + strand, within EX31_RS19030at 397.246 kb on - strand, within EX31_RS19030at 397.246 kb on - strand, within EX31_RS19030at 397.284 kb on + strand, within EX31_RS19030at 397.284 kb on + strand, within EX31_RS19030at 397.284 kb on + strand, within EX31_RS19030at 397.284 kb on + strand, within EX31_RS19030at 397.284 kb on + strand, within EX31_RS19030at 397.285 kb on - strand, within EX31_RS19030at 397.285 kb on - strand, within EX31_RS19030at 397.285 kb on - strand, within EX31_RS19030at 397.350 kb on + strand, within EX31_RS19030at 397.350 kb on + strand, within EX31_RS19030at 397.350 kb on + strand, within EX31_RS19030at 397.350 kb on + strand, within EX31_RS19030at 397.350 kb on + strand, within EX31_RS19030at 397.350 kb on + strand, within EX31_RS19030at 397.351 kb on - strand, within EX31_RS19030at 397.351 kb on - strand, within EX31_RS19030at 397.351 kb on - strand, within EX31_RS19030at 397.351 kb on - strand, within EX31_RS19030at 397.351 kb on - strand, within EX31_RS19030at 397.351 kb on - strand, within EX31_RS19030at 397.351 kb on - strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.352 kb on + strand, within EX31_RS19030at 397.353 kb on - strand, within EX31_RS19030at 397.353 kb on - strand, within EX31_RS19030at 397.407 kb on + strandat 397.407 kb on + strandat 397.408 kb on - strandat 397.477 kb on - strandat 397.477 kb on - strandat 397.532 kb on + strandat 397.540 kb on - strandat 397.584 kb on - strandat 397.587 kb on - strandat 397.644 kb on - strandat 397.644 kb on - strandat 397.644 kb on - strandat 397.644 kb on - strandat 397.674 kb on - strandat 397.709 kb on - strandat 397.751 kb on - strandat 397.863 kb on + strand, within EX31_RS19035at 397.946 kb on + strand, within EX31_RS19035at 397.987 kb on + strand, within EX31_RS19035at 397.988 kb on - strand, within EX31_RS19035at 398.061 kb on - strand, within EX31_RS19035at 398.195 kb on - strand, within EX31_RS19035at 398.195 kb on - strand, within EX31_RS19035at 398.195 kb on - strand, within EX31_RS19035at 398.195 kb on - strand, within EX31_RS19035at 398.223 kb on - strand, within EX31_RS19035at 398.386 kb on + strand, within EX31_RS19035at 398.463 kb on + strandat 398.477 kb on - strandat 398.477 kb on - strandat 398.537 kb on + strandat 398.537 kb on + strandat 398.537 kb on + strandat 398.537 kb on + strandat 398.538 kb on - strandat 398.538 kb on - strandat 398.538 kb on - strandat 398.538 kb on - strandat 398.540 kb on + strandat 398.541 kb on - strandat 398.541 kb on - strandat 398.591 kb on + strandat 398.591 kb on + strandat 398.592 kb on - strandat 398.592 kb on - strandat 398.733 kb on - strand, within EX31_RS19040at 398.791 kb on - strand, within EX31_RS19040at 398.796 kb on - strand, within EX31_RS19040at 398.899 kb on - strand, within EX31_RS19040at 398.985 kb on + strand, within EX31_RS19040at 398.986 kb on - strand, within EX31_RS19040at 398.986 kb on - strand, within EX31_RS19040at 398.986 kb on - strand, within EX31_RS19040at 399.038 kb on + strand, within EX31_RS19040at 399.038 kb on + strand, within EX31_RS19040at 399.155 kb on + strand, within EX31_RS19040at 399.156 kb on - strand, within EX31_RS19040at 399.246 kb on - strand, within EX31_RS19040at 399.312 kb on - strand, within EX31_RS19040at 399.312 kb on - strand, within EX31_RS19040at 399.312 kb on - strand, within EX31_RS19040at 399.312 kb on - strand, within EX31_RS19040at 399.312 kb on - strand, within EX31_RS19040at 399.338 kb on - strand, within EX31_RS19040at 399.444 kb on - strand, within EX31_RS19040at 399.494 kb on + strandat 399.494 kb on + strandat 399.495 kb on - strandat 399.495 kb on - strandat 399.495 kb on - strandat 399.495 kb on - strandat 399.495 kb on - strandat 399.498 kb on + strandat 399.498 kb on + strandat 399.498 kb on + strandat 399.499 kb on - strandat 399.499 kb on - strandat 399.499 kb on - strandat 399.499 kb on - strandat 399.499 kb on - strandat 399.499 kb on - strandat 399.499 kb on - strandat 399.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; shaking
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396,706 + -0.4
396,707 - +0.6
396,829 - EX31_RS19030 0.19 +0.3
396,839 + EX31_RS19030 0.21 +0.5
396,839 + EX31_RS19030 0.21 +0.5
396,929 + EX31_RS19030 0.32 -1.4
396,939 + EX31_RS19030 0.33 -0.4
396,939 + EX31_RS19030 0.33 +2.3
396,939 + EX31_RS19030 0.33 +0.7
396,939 + EX31_RS19030 0.33 -0.5
396,939 + EX31_RS19030 0.33 -0.1
396,939 + EX31_RS19030 0.33 -0.2
396,939 + EX31_RS19030 0.33 +0.3
396,939 + EX31_RS19030 0.33 +0.2
396,939 + EX31_RS19030 0.33 +0.3
396,939 + EX31_RS19030 0.33 +0.6
396,940 - EX31_RS19030 0.33 +0.8
396,940 - EX31_RS19030 0.33 -1.2
396,940 - EX31_RS19030 0.33 +0.0
396,940 - EX31_RS19030 0.33 +0.1
396,940 - EX31_RS19030 0.33 -1.1
396,940 - EX31_RS19030 0.33 +1.3
396,940 - EX31_RS19030 0.33 -0.2
396,940 - EX31_RS19030 0.33 +0.3
396,940 - EX31_RS19030 0.33 -0.0
396,940 - EX31_RS19030 0.33 +0.3
397,050 + EX31_RS19030 0.47 +0.9
397,050 + EX31_RS19030 0.47 -0.7
397,050 + EX31_RS19030 0.47 -0.5
397,050 + EX31_RS19030 0.47 +1.1
397,050 + EX31_RS19030 0.47 -0.5
397,050 + EX31_RS19030 0.47 +1.0
397,051 - EX31_RS19030 0.47 -0.1
397,051 - EX31_RS19030 0.47 -1.1
397,080 + EX31_RS19030 0.51 -0.6
397,080 + EX31_RS19030 0.51 +0.7
397,080 + EX31_RS19030 0.51 -0.0
397,080 + EX31_RS19030 0.51 +0.6
397,080 + EX31_RS19030 0.51 -0.3
397,081 - EX31_RS19030 0.51 +1.1
397,081 - EX31_RS19030 0.51 +0.7
397,081 - EX31_RS19030 0.51 -0.1
397,108 - EX31_RS19030 0.54 +0.9
397,127 + EX31_RS19030 0.56 -0.4
397,127 + EX31_RS19030 0.56 -1.3
397,127 + EX31_RS19030 0.56 +0.6
397,128 - EX31_RS19030 0.57 +0.2
397,128 - EX31_RS19030 0.57 +0.7
397,128 - EX31_RS19030 0.57 -1.2
397,185 - EX31_RS19030 0.64 -0.1
397,245 + EX31_RS19030 0.71 -0.2
397,245 + EX31_RS19030 0.71 -1.2
397,245 + EX31_RS19030 0.71 -1.0
397,246 - EX31_RS19030 0.71 -0.4
397,246 - EX31_RS19030 0.71 +1.5
397,284 + EX31_RS19030 0.76 -0.2
397,284 + EX31_RS19030 0.76 +0.7
397,284 + EX31_RS19030 0.76 -0.3
397,284 + EX31_RS19030 0.76 +0.1
397,284 + EX31_RS19030 0.76 +0.0
397,285 - EX31_RS19030 0.76 -0.7
397,285 - EX31_RS19030 0.76 -0.2
397,285 - EX31_RS19030 0.76 +0.3
397,350 + EX31_RS19030 0.84 -0.1
397,350 + EX31_RS19030 0.84 -0.1
397,350 + EX31_RS19030 0.84 +0.4
397,350 + EX31_RS19030 0.84 +0.8
397,350 + EX31_RS19030 0.84 +0.4
397,350 + EX31_RS19030 0.84 -0.2
397,351 - EX31_RS19030 0.84 +3.5
397,351 - EX31_RS19030 0.84 -1.6
397,351 - EX31_RS19030 0.84 -0.3
397,351 - EX31_RS19030 0.84 -0.2
397,351 - EX31_RS19030 0.84 +0.4
397,351 - EX31_RS19030 0.84 +0.6
397,351 - EX31_RS19030 0.84 +0.5
397,352 + EX31_RS19030 0.84 +0.3
397,352 + EX31_RS19030 0.84 +0.5
397,352 + EX31_RS19030 0.84 +0.2
397,352 + EX31_RS19030 0.84 -0.2
397,352 + EX31_RS19030 0.84 -0.4
397,352 + EX31_RS19030 0.84 -0.1
397,352 + EX31_RS19030 0.84 +1.1
397,352 + EX31_RS19030 0.84 -1.0
397,352 + EX31_RS19030 0.84 -1.4
397,353 - EX31_RS19030 0.84 -2.1
397,353 - EX31_RS19030 0.84 +0.9
397,407 + +0.2
397,407 + +2.9
397,408 - +2.5
397,477 - -1.8
397,477 - +0.3
397,532 + +0.7
397,540 - -0.8
397,584 - -0.2
397,587 - +0.1
397,644 - +0.8
397,644 - -0.3
397,644 - +0.2
397,644 - +1.7
397,674 - -0.4
397,709 - +0.2
397,751 - +0.3
397,863 + EX31_RS19035 0.23 +0.9
397,946 + EX31_RS19035 0.33 +0.2
397,987 + EX31_RS19035 0.38 +1.3
397,988 - EX31_RS19035 0.38 +0.6
398,061 - EX31_RS19035 0.46 +0.2
398,195 - EX31_RS19035 0.62 +0.7
398,195 - EX31_RS19035 0.62 +1.4
398,195 - EX31_RS19035 0.62 -0.8
398,195 - EX31_RS19035 0.62 +0.5
398,223 - EX31_RS19035 0.66 -1.0
398,386 + EX31_RS19035 0.85 -0.8
398,463 + -0.4
398,477 - +0.5
398,477 - +0.5
398,537 + +0.8
398,537 + +0.2
398,537 + +1.6
398,537 + -0.4
398,538 - +0.1
398,538 - +0.0
398,538 - +0.9
398,538 - +0.9
398,540 + +1.9
398,541 - -0.3
398,541 - +1.9
398,591 + +1.0
398,591 + -1.4
398,592 - -1.6
398,592 - -1.1
398,733 - EX31_RS19040 0.20 +0.6
398,791 - EX31_RS19040 0.26 +0.5
398,796 - EX31_RS19040 0.26 -0.4
398,899 - EX31_RS19040 0.36 -1.2
398,985 + EX31_RS19040 0.44 -1.1
398,986 - EX31_RS19040 0.44 +1.2
398,986 - EX31_RS19040 0.44 +0.3
398,986 - EX31_RS19040 0.44 +0.3
399,038 + EX31_RS19040 0.49 -0.1
399,038 + EX31_RS19040 0.49 -0.7
399,155 + EX31_RS19040 0.59 -0.6
399,156 - EX31_RS19040 0.60 +1.2
399,246 - EX31_RS19040 0.68 -0.5
399,312 - EX31_RS19040 0.74 +0.0
399,312 - EX31_RS19040 0.74 +1.3
399,312 - EX31_RS19040 0.74 -0.6
399,312 - EX31_RS19040 0.74 -0.4
399,312 - EX31_RS19040 0.74 +0.1
399,338 - EX31_RS19040 0.76 +0.6
399,444 - EX31_RS19040 0.86 -0.5
399,494 + +0.0
399,494 + -0.3
399,495 - +0.7
399,495 - +1.1
399,495 - -1.4
399,495 - +0.5
399,495 - +0.5
399,498 + +0.8
399,498 + +0.3
399,498 + +0.9
399,499 - +0.0
399,499 - +1.6
399,499 - +0.4
399,499 - +1.9
399,499 - -0.4
399,499 - -1.3
399,499 - +0.7
399,499 - +1.0

Or see this region's nucleotide sequence