Strain Fitness in Rahnella sp. WP5 around EX31_RS06060

Experiment: L-Glutamine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06050 and EX31_RS06055 are separated by 10 nucleotidesEX31_RS06055 and EX31_RS06060 are separated by 92 nucleotidesEX31_RS06060 and EX31_RS06065 are separated by 1 nucleotides EX31_RS06050: EX31_RS06050 - phosphate signaling complex protein PhoU, at 370,669 to 371,400 _RS06050 EX31_RS06055: EX31_RS06055 - phosphate ABC transporter ATP-binding protein PstB, at 371,411 to 372,178 _RS06055 EX31_RS06060: EX31_RS06060 - phosphate ABC transporter permease PstA, at 372,271 to 373,158 _RS06060 EX31_RS06065: EX31_RS06065 - phosphate ABC transporter permease PstC, at 373,160 to 374,116 _RS06065 Position (kb) 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 371.384 kb on - strandat 371.408 kb on - strandat 371.408 kb on - strandat 371.429 kb on - strandat 371.434 kb on - strandat 371.434 kb on - strandat 371.434 kb on - strandat 371.434 kb on - strandat 371.434 kb on - strandat 371.434 kb on - strandat 371.488 kb on - strand, within EX31_RS06055at 371.509 kb on - strand, within EX31_RS06055at 371.509 kb on - strand, within EX31_RS06055at 371.509 kb on - strand, within EX31_RS06055at 371.509 kb on - strand, within EX31_RS06055at 371.509 kb on - strand, within EX31_RS06055at 371.513 kb on - strand, within EX31_RS06055at 371.696 kb on - strand, within EX31_RS06055at 371.731 kb on - strand, within EX31_RS06055at 371.731 kb on - strand, within EX31_RS06055at 371.939 kb on - strand, within EX31_RS06055at 371.939 kb on - strand, within EX31_RS06055at 371.939 kb on - strand, within EX31_RS06055at 371.939 kb on - strand, within EX31_RS06055at 372.041 kb on - strand, within EX31_RS06055at 372.130 kb on - strandat 372.224 kb on - strandat 372.334 kb on - strandat 372.344 kb on - strandat 372.344 kb on - strandat 372.344 kb on - strandat 372.397 kb on - strand, within EX31_RS06060at 372.469 kb on - strand, within EX31_RS06060at 372.469 kb on - strand, within EX31_RS06060at 372.469 kb on - strand, within EX31_RS06060at 372.499 kb on - strand, within EX31_RS06060at 372.730 kb on - strand, within EX31_RS06060at 372.730 kb on - strand, within EX31_RS06060at 372.738 kb on - strand, within EX31_RS06060at 372.820 kb on - strand, within EX31_RS06060at 372.820 kb on - strand, within EX31_RS06060at 372.820 kb on - strand, within EX31_RS06060at 372.820 kb on - strand, within EX31_RS06060at 372.840 kb on - strand, within EX31_RS06060at 372.940 kb on - strand, within EX31_RS06060at 372.997 kb on - strand, within EX31_RS06060at 373.057 kb on - strand, within EX31_RS06060at 373.124 kb on - strandat 373.135 kb on - strandat 373.135 kb on - strandat 373.135 kb on - strandat 373.135 kb on - strandat 373.135 kb on - strandat 373.220 kb on - strandat 373.220 kb on - strandat 373.220 kb on - strandat 373.268 kb on - strand, within EX31_RS06065at 373.268 kb on - strand, within EX31_RS06065at 373.268 kb on - strand, within EX31_RS06065at 373.268 kb on - strand, within EX31_RS06065at 373.268 kb on - strand, within EX31_RS06065at 373.268 kb on - strand, within EX31_RS06065at 373.268 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.316 kb on - strand, within EX31_RS06065at 373.319 kb on - strand, within EX31_RS06065at 373.319 kb on - strand, within EX31_RS06065at 373.319 kb on - strand, within EX31_RS06065at 373.319 kb on - strand, within EX31_RS06065at 373.319 kb on - strand, within EX31_RS06065at 373.360 kb on - strand, within EX31_RS06065at 373.360 kb on - strand, within EX31_RS06065at 373.360 kb on - strand, within EX31_RS06065at 373.376 kb on - strand, within EX31_RS06065at 373.419 kb on - strand, within EX31_RS06065at 373.419 kb on - strand, within EX31_RS06065at 373.487 kb on - strand, within EX31_RS06065at 373.487 kb on - strand, within EX31_RS06065at 373.487 kb on - strand, within EX31_RS06065at 373.563 kb on - strand, within EX31_RS06065at 373.563 kb on - strand, within EX31_RS06065at 373.563 kb on - strand, within EX31_RS06065at 373.563 kb on - strand, within EX31_RS06065at 373.563 kb on - strand, within EX31_RS06065at 373.567 kb on - strand, within EX31_RS06065at 373.580 kb on - strand, within EX31_RS06065at 373.610 kb on - strand, within EX31_RS06065at 373.668 kb on - strand, within EX31_RS06065at 373.693 kb on - strand, within EX31_RS06065at 373.745 kb on - strand, within EX31_RS06065at 373.745 kb on - strand, within EX31_RS06065at 373.868 kb on - strand, within EX31_RS06065at 374.021 kb on - strandat 374.021 kb on - strandat 374.021 kb on - strandat 374.021 kb on - strandat 374.021 kb on - strandat 374.021 kb on - strandat 374.021 kb on - strandat 374.021 kb on - strandat 374.025 kb on - strandat 374.025 kb on - strandat 374.025 kb on - strandat 374.107 kb on - strandat 374.130 kb on - strandat 374.130 kb on - strandat 374.141 kb on - strandat 374.141 kb on - strandat 374.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; shaking
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371,384 - -1.3
371,408 - -0.2
371,408 - +0.7
371,429 - -1.9
371,434 - -0.0
371,434 - -1.3
371,434 - -1.3
371,434 - +0.5
371,434 - -0.9
371,434 - -1.9
371,488 - EX31_RS06055 0.10 -0.6
371,509 - EX31_RS06055 0.13 -0.5
371,509 - EX31_RS06055 0.13 +1.4
371,509 - EX31_RS06055 0.13 +1.2
371,509 - EX31_RS06055 0.13 +0.3
371,509 - EX31_RS06055 0.13 -1.5
371,513 - EX31_RS06055 0.13 -0.4
371,696 - EX31_RS06055 0.37 -1.6
371,731 - EX31_RS06055 0.42 -0.5
371,731 - EX31_RS06055 0.42 -1.8
371,939 - EX31_RS06055 0.69 -2.4
371,939 - EX31_RS06055 0.69 -1.8
371,939 - EX31_RS06055 0.69 +0.8
371,939 - EX31_RS06055 0.69 -2.4
372,041 - EX31_RS06055 0.82 -0.6
372,130 - -3.4
372,224 - +0.0
372,334 - +1.1
372,344 - +2.0
372,344 - -1.5
372,344 - -1.0
372,397 - EX31_RS06060 0.14 +1.6
372,469 - EX31_RS06060 0.22 +0.4
372,469 - EX31_RS06060 0.22 -2.5
372,469 - EX31_RS06060 0.22 -2.9
372,499 - EX31_RS06060 0.26 -1.2
372,730 - EX31_RS06060 0.52 -1.4
372,730 - EX31_RS06060 0.52 -1.3
372,738 - EX31_RS06060 0.53 -0.8
372,820 - EX31_RS06060 0.62 -0.1
372,820 - EX31_RS06060 0.62 -0.7
372,820 - EX31_RS06060 0.62 -0.5
372,820 - EX31_RS06060 0.62 -1.0
372,840 - EX31_RS06060 0.64 -1.0
372,940 - EX31_RS06060 0.75 -1.8
372,997 - EX31_RS06060 0.82 -1.7
373,057 - EX31_RS06060 0.89 -2.0
373,124 - -0.9
373,135 - -1.8
373,135 - -1.9
373,135 - -0.3
373,135 - -0.7
373,135 - -1.4
373,220 - -1.1
373,220 - -0.4
373,220 - -0.4
373,268 - EX31_RS06065 0.11 -2.1
373,268 - EX31_RS06065 0.11 -1.6
373,268 - EX31_RS06065 0.11 -0.5
373,268 - EX31_RS06065 0.11 -1.2
373,268 - EX31_RS06065 0.11 -0.9
373,268 - EX31_RS06065 0.11 -0.8
373,268 - EX31_RS06065 0.11 -1.6
373,316 - EX31_RS06065 0.16 -1.9
373,316 - EX31_RS06065 0.16 -2.4
373,316 - EX31_RS06065 0.16 -1.0
373,316 - EX31_RS06065 0.16 -1.2
373,316 - EX31_RS06065 0.16 -2.2
373,316 - EX31_RS06065 0.16 -0.1
373,316 - EX31_RS06065 0.16 +0.5
373,316 - EX31_RS06065 0.16 +0.6
373,316 - EX31_RS06065 0.16 +0.2
373,316 - EX31_RS06065 0.16 -1.4
373,319 - EX31_RS06065 0.17 -2.2
373,319 - EX31_RS06065 0.17 -1.0
373,319 - EX31_RS06065 0.17 -0.1
373,319 - EX31_RS06065 0.17 -3.3
373,319 - EX31_RS06065 0.17 -1.9
373,360 - EX31_RS06065 0.21 -1.2
373,360 - EX31_RS06065 0.21 -2.3
373,360 - EX31_RS06065 0.21 -0.8
373,376 - EX31_RS06065 0.23 -1.2
373,419 - EX31_RS06065 0.27 -0.3
373,419 - EX31_RS06065 0.27 -1.7
373,487 - EX31_RS06065 0.34 -0.4
373,487 - EX31_RS06065 0.34 -1.6
373,487 - EX31_RS06065 0.34 -0.4
373,563 - EX31_RS06065 0.42 -0.5
373,563 - EX31_RS06065 0.42 -1.2
373,563 - EX31_RS06065 0.42 -2.0
373,563 - EX31_RS06065 0.42 -0.7
373,563 - EX31_RS06065 0.42 -1.7
373,567 - EX31_RS06065 0.43 -1.4
373,580 - EX31_RS06065 0.44 -0.7
373,610 - EX31_RS06065 0.47 -0.0
373,668 - EX31_RS06065 0.53 -1.3
373,693 - EX31_RS06065 0.56 +0.1
373,745 - EX31_RS06065 0.61 +1.8
373,745 - EX31_RS06065 0.61 -1.5
373,868 - EX31_RS06065 0.74 -0.7
374,021 - -1.6
374,021 - -0.2
374,021 - -0.4
374,021 - -2.5
374,021 - +0.4
374,021 - -2.5
374,021 - -0.2
374,021 - -0.4
374,025 - -1.8
374,025 - -1.4
374,025 - -0.9
374,107 - +2.4
374,130 - +0.4
374,130 - -1.1
374,141 - -0.9
374,141 - +0.4
374,141 - -0.2

Or see this region's nucleotide sequence