Strain Fitness in Rahnella sp. WP5 around EX31_RS02800

Experiment: L-Glutamine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02795 and EX31_RS02800 are separated by 312 nucleotidesEX31_RS02800 and EX31_RS02805 are separated by 362 nucleotides EX31_RS02795: EX31_RS02795 - polysaccharide export protein, at 29,615 to 30,745 _RS02795 EX31_RS02800: EX31_RS02800 - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 31,058 to 32,131 _RS02800 EX31_RS02805: EX31_RS02805 - ornithine decarboxylase SpeF, at 32,494 to 34,656 _RS02805 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 30.063 kb on - strand, within EX31_RS02795at 30.098 kb on - strand, within EX31_RS02795at 30.138 kb on - strand, within EX31_RS02795at 30.154 kb on + strand, within EX31_RS02795at 30.155 kb on - strand, within EX31_RS02795at 30.194 kb on + strand, within EX31_RS02795at 30.194 kb on + strand, within EX31_RS02795at 30.195 kb on - strand, within EX31_RS02795at 30.228 kb on + strand, within EX31_RS02795at 30.228 kb on + strand, within EX31_RS02795at 30.228 kb on + strand, within EX31_RS02795at 30.228 kb on + strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.283 kb on + strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.285 kb on + strand, within EX31_RS02795at 30.285 kb on + strand, within EX31_RS02795at 30.286 kb on - strand, within EX31_RS02795at 30.286 kb on - strand, within EX31_RS02795at 30.286 kb on - strand, within EX31_RS02795at 30.307 kb on + strand, within EX31_RS02795at 30.356 kb on + strand, within EX31_RS02795at 30.356 kb on + strand, within EX31_RS02795at 30.356 kb on + strand, within EX31_RS02795at 30.356 kb on + strand, within EX31_RS02795at 30.357 kb on - strand, within EX31_RS02795at 30.360 kb on + strand, within EX31_RS02795at 30.360 kb on + strand, within EX31_RS02795at 30.361 kb on - strand, within EX31_RS02795at 30.361 kb on - strand, within EX31_RS02795at 30.361 kb on - strand, within EX31_RS02795at 30.361 kb on - strand, within EX31_RS02795at 30.367 kb on - strand, within EX31_RS02795at 30.371 kb on + strand, within EX31_RS02795at 30.372 kb on - strand, within EX31_RS02795at 30.458 kb on + strand, within EX31_RS02795at 30.463 kb on + strand, within EX31_RS02795at 30.463 kb on + strand, within EX31_RS02795at 30.464 kb on - strand, within EX31_RS02795at 30.464 kb on - strand, within EX31_RS02795at 30.473 kb on + strand, within EX31_RS02795at 30.473 kb on + strand, within EX31_RS02795at 30.473 kb on + strand, within EX31_RS02795at 30.473 kb on + strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.476 kb on - strand, within EX31_RS02795at 30.476 kb on - strand, within EX31_RS02795at 30.476 kb on - strand, within EX31_RS02795at 30.492 kb on + strand, within EX31_RS02795at 30.492 kb on + strand, within EX31_RS02795at 30.493 kb on - strand, within EX31_RS02795at 30.493 kb on - strand, within EX31_RS02795at 30.493 kb on - strand, within EX31_RS02795at 30.493 kb on - strand, within EX31_RS02795at 30.495 kb on + strand, within EX31_RS02795at 30.495 kb on + strand, within EX31_RS02795at 30.496 kb on - strand, within EX31_RS02795at 30.496 kb on - strand, within EX31_RS02795at 30.501 kb on + strand, within EX31_RS02795at 30.502 kb on - strand, within EX31_RS02795at 30.508 kb on + strand, within EX31_RS02795at 30.508 kb on + strand, within EX31_RS02795at 30.614 kb on - strand, within EX31_RS02795at 30.662 kb on + strandat 30.685 kb on + strandat 30.685 kb on + strandat 30.686 kb on - strandat 30.686 kb on - strandat 30.686 kb on - strandat 30.686 kb on - strandat 30.711 kb on - strandat 30.782 kb on + strandat 30.782 kb on + strandat 30.783 kb on - strandat 31.158 kb on + strandat 31.158 kb on + strandat 31.268 kb on - strand, within EX31_RS02800at 31.442 kb on - strand, within EX31_RS02800at 31.444 kb on - strand, within EX31_RS02800at 31.475 kb on - strand, within EX31_RS02800at 31.495 kb on + strand, within EX31_RS02800at 31.495 kb on + strand, within EX31_RS02800at 31.495 kb on + strand, within EX31_RS02800at 31.495 kb on + strand, within EX31_RS02800at 31.573 kb on + strand, within EX31_RS02800at 31.587 kb on + strand, within EX31_RS02800at 31.665 kb on - strand, within EX31_RS02800at 31.742 kb on + strand, within EX31_RS02800at 31.743 kb on - strand, within EX31_RS02800at 31.757 kb on - strand, within EX31_RS02800at 31.757 kb on - strand, within EX31_RS02800at 31.764 kb on + strand, within EX31_RS02800at 31.765 kb on - strand, within EX31_RS02800at 31.793 kb on - strand, within EX31_RS02800at 31.793 kb on - strand, within EX31_RS02800at 31.795 kb on + strand, within EX31_RS02800at 31.796 kb on - strand, within EX31_RS02800at 31.796 kb on - strand, within EX31_RS02800at 31.796 kb on - strand, within EX31_RS02800at 31.797 kb on + strand, within EX31_RS02800at 31.798 kb on - strand, within EX31_RS02800at 31.800 kb on - strand, within EX31_RS02800at 31.813 kb on + strand, within EX31_RS02800at 31.814 kb on - strand, within EX31_RS02800at 31.980 kb on + strand, within EX31_RS02800at 31.984 kb on + strand, within EX31_RS02800at 32.066 kb on + strandat 32.161 kb on + strandat 32.410 kb on + strandat 32.510 kb on + strandat 32.511 kb on - strandat 32.552 kb on + strandat 32.552 kb on + strandat 32.552 kb on + strandat 32.552 kb on + strandat 32.552 kb on + strandat 32.552 kb on + strandat 32.553 kb on - strandat 32.553 kb on - strandat 32.553 kb on - strandat 32.553 kb on - strandat 32.553 kb on - strandat 32.553 kb on - strandat 32.596 kb on - strandat 32.613 kb on + strandat 32.662 kb on + strandat 32.662 kb on + strandat 32.662 kb on + strandat 32.662 kb on + strandat 32.663 kb on - strandat 32.663 kb on - strandat 32.663 kb on - strandat 32.663 kb on - strandat 32.663 kb on - strandat 32.663 kb on - strandat 32.678 kb on + strandat 32.679 kb on - strandat 32.786 kb on - strand, within EX31_RS02805at 32.824 kb on + strand, within EX31_RS02805at 32.849 kb on + strand, within EX31_RS02805at 32.849 kb on + strand, within EX31_RS02805at 32.849 kb on + strand, within EX31_RS02805at 32.857 kb on - strand, within EX31_RS02805at 32.857 kb on - strand, within EX31_RS02805at 32.888 kb on + strand, within EX31_RS02805at 32.888 kb on + strand, within EX31_RS02805at 32.889 kb on - strand, within EX31_RS02805at 32.889 kb on - strand, within EX31_RS02805at 32.889 kb on - strand, within EX31_RS02805at 32.889 kb on - strand, within EX31_RS02805at 32.889 kb on - strand, within EX31_RS02805at 32.963 kb on + strand, within EX31_RS02805at 32.963 kb on + strand, within EX31_RS02805at 32.963 kb on + strand, within EX31_RS02805at 32.963 kb on + strand, within EX31_RS02805at 32.963 kb on + strand, within EX31_RS02805at 32.963 kb on + strand, within EX31_RS02805at 32.963 kb on + strand, within EX31_RS02805at 32.963 kb on + strand, within EX31_RS02805at 32.964 kb on - strand, within EX31_RS02805at 32.964 kb on - strand, within EX31_RS02805at 33.089 kb on + strand, within EX31_RS02805at 33.089 kb on + strand, within EX31_RS02805at 33.089 kb on + strand, within EX31_RS02805at 33.090 kb on - strand, within EX31_RS02805at 33.090 kb on - strand, within EX31_RS02805at 33.090 kb on - strand, within EX31_RS02805at 33.090 kb on - strand, within EX31_RS02805at 33.090 kb on - strand, within EX31_RS02805at 33.090 kb on - strand, within EX31_RS02805at 33.090 kb on - strand, within EX31_RS02805at 33.128 kb on + strand, within EX31_RS02805at 33.128 kb on + strand, within EX31_RS02805at 33.129 kb on - strand, within EX31_RS02805

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; shaking
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30,063 - EX31_RS02795 0.40 +0.7
30,098 - EX31_RS02795 0.43 -0.2
30,138 - EX31_RS02795 0.46 +0.4
30,154 + EX31_RS02795 0.48 +0.7
30,155 - EX31_RS02795 0.48 -0.2
30,194 + EX31_RS02795 0.51 +0.2
30,194 + EX31_RS02795 0.51 +1.0
30,195 - EX31_RS02795 0.51 +0.7
30,228 + EX31_RS02795 0.54 -1.7
30,228 + EX31_RS02795 0.54 +0.3
30,228 + EX31_RS02795 0.54 +0.5
30,228 + EX31_RS02795 0.54 -0.2
30,229 - EX31_RS02795 0.54 +2.0
30,229 - EX31_RS02795 0.54 +0.0
30,229 - EX31_RS02795 0.54 -0.5
30,229 - EX31_RS02795 0.54 -0.3
30,229 - EX31_RS02795 0.54 +0.5
30,229 - EX31_RS02795 0.54 +2.0
30,283 + EX31_RS02795 0.59 +0.2
30,284 - EX31_RS02795 0.59 -0.0
30,284 - EX31_RS02795 0.59 -0.7
30,284 - EX31_RS02795 0.59 +2.6
30,284 - EX31_RS02795 0.59 -0.7
30,284 - EX31_RS02795 0.59 +1.8
30,285 + EX31_RS02795 0.59 +0.1
30,285 + EX31_RS02795 0.59 +1.4
30,286 - EX31_RS02795 0.59 -0.2
30,286 - EX31_RS02795 0.59 -0.9
30,286 - EX31_RS02795 0.59 -0.1
30,307 + EX31_RS02795 0.61 +1.0
30,356 + EX31_RS02795 0.66 +1.3
30,356 + EX31_RS02795 0.66 +0.3
30,356 + EX31_RS02795 0.66 +0.6
30,356 + EX31_RS02795 0.66 +0.3
30,357 - EX31_RS02795 0.66 -0.6
30,360 + EX31_RS02795 0.66 +0.7
30,360 + EX31_RS02795 0.66 +1.6
30,361 - EX31_RS02795 0.66 -0.9
30,361 - EX31_RS02795 0.66 +1.7
30,361 - EX31_RS02795 0.66 +0.1
30,361 - EX31_RS02795 0.66 -0.2
30,367 - EX31_RS02795 0.66 +2.3
30,371 + EX31_RS02795 0.67 -1.2
30,372 - EX31_RS02795 0.67 -0.3
30,458 + EX31_RS02795 0.75 +0.7
30,463 + EX31_RS02795 0.75 +0.5
30,463 + EX31_RS02795 0.75 +1.7
30,464 - EX31_RS02795 0.75 +0.7
30,464 - EX31_RS02795 0.75 +0.7
30,473 + EX31_RS02795 0.76 +0.2
30,473 + EX31_RS02795 0.76 +1.5
30,473 + EX31_RS02795 0.76 +1.4
30,473 + EX31_RS02795 0.76 +0.6
30,474 - EX31_RS02795 0.76 +0.5
30,474 - EX31_RS02795 0.76 -1.6
30,474 - EX31_RS02795 0.76 +0.3
30,474 - EX31_RS02795 0.76 +0.1
30,474 - EX31_RS02795 0.76 +0.1
30,476 - EX31_RS02795 0.76 -1.7
30,476 - EX31_RS02795 0.76 +0.5
30,476 - EX31_RS02795 0.76 +0.1
30,492 + EX31_RS02795 0.78 +0.9
30,492 + EX31_RS02795 0.78 -0.0
30,493 - EX31_RS02795 0.78 +0.1
30,493 - EX31_RS02795 0.78 -0.4
30,493 - EX31_RS02795 0.78 +0.4
30,493 - EX31_RS02795 0.78 +0.5
30,495 + EX31_RS02795 0.78 +0.1
30,495 + EX31_RS02795 0.78 -1.7
30,496 - EX31_RS02795 0.78 +0.2
30,496 - EX31_RS02795 0.78 +0.9
30,501 + EX31_RS02795 0.78 -0.0
30,502 - EX31_RS02795 0.78 +0.7
30,508 + EX31_RS02795 0.79 -0.6
30,508 + EX31_RS02795 0.79 +0.7
30,614 - EX31_RS02795 0.88 +0.7
30,662 + +0.1
30,685 + -0.5
30,685 + +0.6
30,686 - +0.1
30,686 - -0.5
30,686 - -1.6
30,686 - +1.1
30,711 - -0.0
30,782 + -1.2
30,782 + +0.4
30,783 - +0.2
31,158 + -0.0
31,158 + +1.0
31,268 - EX31_RS02800 0.20 -0.0
31,442 - EX31_RS02800 0.36 +0.6
31,444 - EX31_RS02800 0.36 -0.2
31,475 - EX31_RS02800 0.39 +0.7
31,495 + EX31_RS02800 0.41 +0.3
31,495 + EX31_RS02800 0.41 +1.5
31,495 + EX31_RS02800 0.41 +2.0
31,495 + EX31_RS02800 0.41 -1.5
31,573 + EX31_RS02800 0.48 +1.0
31,587 + EX31_RS02800 0.49 +1.8
31,665 - EX31_RS02800 0.57 +0.4
31,742 + EX31_RS02800 0.64 +2.6
31,743 - EX31_RS02800 0.64 +0.0
31,757 - EX31_RS02800 0.65 -0.0
31,757 - EX31_RS02800 0.65 -1.0
31,764 + EX31_RS02800 0.66 -1.9
31,765 - EX31_RS02800 0.66 +0.6
31,793 - EX31_RS02800 0.68 +1.3
31,793 - EX31_RS02800 0.68 -0.0
31,795 + EX31_RS02800 0.69 +1.4
31,796 - EX31_RS02800 0.69 +0.9
31,796 - EX31_RS02800 0.69 +0.5
31,796 - EX31_RS02800 0.69 +0.3
31,797 + EX31_RS02800 0.69 +1.2
31,798 - EX31_RS02800 0.69 +0.1
31,800 - EX31_RS02800 0.69 -0.4
31,813 + EX31_RS02800 0.70 -1.8
31,814 - EX31_RS02800 0.70 +0.6
31,980 + EX31_RS02800 0.86 +0.6
31,984 + EX31_RS02800 0.86 +0.8
32,066 + -0.3
32,161 + -2.3
32,410 + +1.0
32,510 + -0.4
32,511 - +0.7
32,552 + -0.1
32,552 + +0.7
32,552 + -1.3
32,552 + -0.9
32,552 + -0.1
32,552 + +0.4
32,553 - +0.1
32,553 - +0.4
32,553 - -0.2
32,553 - -0.0
32,553 - +2.0
32,553 - +0.8
32,596 - -0.9
32,613 + +0.0
32,662 + +2.0
32,662 + -0.9
32,662 + +1.0
32,662 + +0.2
32,663 - +1.0
32,663 - -0.2
32,663 - +0.2
32,663 - +0.2
32,663 - -0.1
32,663 - -0.3
32,678 + -0.3
32,679 - -0.0
32,786 - EX31_RS02805 0.13 +0.1
32,824 + EX31_RS02805 0.15 -1.5
32,849 + EX31_RS02805 0.16 -0.2
32,849 + EX31_RS02805 0.16 +0.3
32,849 + EX31_RS02805 0.16 +0.5
32,857 - EX31_RS02805 0.17 +0.2
32,857 - EX31_RS02805 0.17 -0.8
32,888 + EX31_RS02805 0.18 -0.9
32,888 + EX31_RS02805 0.18 +1.2
32,889 - EX31_RS02805 0.18 +1.0
32,889 - EX31_RS02805 0.18 -1.0
32,889 - EX31_RS02805 0.18 -0.4
32,889 - EX31_RS02805 0.18 -1.2
32,889 - EX31_RS02805 0.18 +1.1
32,963 + EX31_RS02805 0.22 -0.8
32,963 + EX31_RS02805 0.22 -0.5
32,963 + EX31_RS02805 0.22 +0.5
32,963 + EX31_RS02805 0.22 -0.0
32,963 + EX31_RS02805 0.22 +1.3
32,963 + EX31_RS02805 0.22 -1.5
32,963 + EX31_RS02805 0.22 -1.1
32,963 + EX31_RS02805 0.22 +2.0
32,964 - EX31_RS02805 0.22 +0.5
32,964 - EX31_RS02805 0.22 +0.0
33,089 + EX31_RS02805 0.28 +0.2
33,089 + EX31_RS02805 0.28 +0.5
33,089 + EX31_RS02805 0.28 +0.1
33,090 - EX31_RS02805 0.28 +0.9
33,090 - EX31_RS02805 0.28 +0.6
33,090 - EX31_RS02805 0.28 +0.2
33,090 - EX31_RS02805 0.28 -1.2
33,090 - EX31_RS02805 0.28 +0.3
33,090 - EX31_RS02805 0.28 -0.7
33,090 - EX31_RS02805 0.28 +0.2
33,128 + EX31_RS02805 0.29 -0.8
33,128 + EX31_RS02805 0.29 +0.5
33,129 - EX31_RS02805 0.29 -0.0

Or see this region's nucleotide sequence