Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2548

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2546 and Ac3H11_2547 are separated by 64 nucleotidesAc3H11_2547 and Ac3H11_2548 are separated by 66 nucleotidesAc3H11_2548 and Ac3H11_2549 are separated by 36 nucleotides Ac3H11_2546 - Benzoate transport, ATP binding protein, at 823,964 to 824,677 _2546 Ac3H11_2547 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 824,742 to 825,590 _2547 Ac3H11_2548 - N-formylglutamate deformylase (EC 3.5.1.68) (from data), at 825,657 to 826,469 _2548 Ac3H11_2549 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data), at 826,506 to 827,900 _2549 Position (kb) 825 826 827Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 824.706 kb on + strandat 824.707 kb on - strandat 825.732 kb on + strandat 825.733 kb on - strandat 825.746 kb on - strand, within Ac3H11_2548at 825.746 kb on - strand, within Ac3H11_2548at 825.770 kb on + strand, within Ac3H11_2548at 825.770 kb on + strand, within Ac3H11_2548at 825.771 kb on - strand, within Ac3H11_2548at 825.771 kb on - strand, within Ac3H11_2548at 825.771 kb on - strand, within Ac3H11_2548at 825.771 kb on - strand, within Ac3H11_2548at 825.771 kb on - strand, within Ac3H11_2548at 825.772 kb on + strand, within Ac3H11_2548at 825.772 kb on + strand, within Ac3H11_2548at 825.772 kb on + strand, within Ac3H11_2548at 825.772 kb on + strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 825.773 kb on - strand, within Ac3H11_2548at 826.087 kb on + strand, within Ac3H11_2548at 826.088 kb on - strand, within Ac3H11_2548at 826.153 kb on + strand, within Ac3H11_2548at 826.153 kb on + strand, within Ac3H11_2548at 826.154 kb on - strand, within Ac3H11_2548at 826.154 kb on - strand, within Ac3H11_2548at 826.175 kb on + strand, within Ac3H11_2548at 826.213 kb on + strand, within Ac3H11_2548at 826.213 kb on + strand, within Ac3H11_2548at 826.256 kb on - strand, within Ac3H11_2548at 826.256 kb on - strand, within Ac3H11_2548at 826.309 kb on + strand, within Ac3H11_2548at 826.309 kb on + strand, within Ac3H11_2548at 826.309 kb on + strand, within Ac3H11_2548at 826.310 kb on - strand, within Ac3H11_2548at 826.310 kb on - strand, within Ac3H11_2548at 826.310 kb on - strand, within Ac3H11_2548at 826.310 kb on - strand, within Ac3H11_2548at 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.390 kb on + strandat 826.391 kb on - strandat 826.391 kb on - strandat 826.391 kb on - strandat 826.391 kb on - strandat 826.391 kb on - strandat 826.469 kb on + strandat 826.470 kb on - strandat 826.470 kb on - strandat 826.470 kb on - strandat 826.539 kb on + strandat 826.871 kb on - strand, within Ac3H11_2549at 827.045 kb on - strand, within Ac3H11_2549at 827.216 kb on + strand, within Ac3H11_2549at 827.217 kb on - strand, within Ac3H11_2549at 827.217 kb on - strand, within Ac3H11_2549at 827.410 kb on + strand, within Ac3H11_2549at 827.411 kb on - strand, within Ac3H11_2549

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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824,706 + +0.0
824,707 - +0.8
825,732 + -0.0
825,733 - -0.4
825,746 - Ac3H11_2548 0.11 -0.8
825,746 - Ac3H11_2548 0.11 -0.3
825,770 + Ac3H11_2548 0.14 -0.2
825,770 + Ac3H11_2548 0.14 -0.2
825,771 - Ac3H11_2548 0.14 -0.3
825,771 - Ac3H11_2548 0.14 -0.6
825,771 - Ac3H11_2548 0.14 -0.5
825,771 - Ac3H11_2548 0.14 +0.3
825,771 - Ac3H11_2548 0.14 -1.4
825,772 + Ac3H11_2548 0.14 +0.2
825,772 + Ac3H11_2548 0.14 -0.2
825,772 + Ac3H11_2548 0.14 +0.1
825,772 + Ac3H11_2548 0.14 -0.0
825,773 - Ac3H11_2548 0.14 -0.1
825,773 - Ac3H11_2548 0.14 -0.3
825,773 - Ac3H11_2548 0.14 +0.4
825,773 - Ac3H11_2548 0.14 +1.0
825,773 - Ac3H11_2548 0.14 -2.2
825,773 - Ac3H11_2548 0.14 -0.5
825,773 - Ac3H11_2548 0.14 -0.1
825,773 - Ac3H11_2548 0.14 -1.7
825,773 - Ac3H11_2548 0.14 -0.3
825,773 - Ac3H11_2548 0.14 +0.1
826,087 + Ac3H11_2548 0.53 -0.3
826,088 - Ac3H11_2548 0.53 -0.1
826,153 + Ac3H11_2548 0.61 -0.4
826,153 + Ac3H11_2548 0.61 +0.6
826,154 - Ac3H11_2548 0.61 -0.5
826,154 - Ac3H11_2548 0.61 +0.1
826,175 + Ac3H11_2548 0.64 +0.1
826,213 + Ac3H11_2548 0.68 +0.3
826,213 + Ac3H11_2548 0.68 +0.9
826,256 - Ac3H11_2548 0.74 -1.0
826,256 - Ac3H11_2548 0.74 -0.6
826,309 + Ac3H11_2548 0.80 -0.1
826,309 + Ac3H11_2548 0.80 -0.7
826,309 + Ac3H11_2548 0.80 -0.5
826,310 - Ac3H11_2548 0.80 +1.0
826,310 - Ac3H11_2548 0.80 +1.0
826,310 - Ac3H11_2548 0.80 +0.2
826,310 - Ac3H11_2548 0.80 -0.1
826,390 + +0.3
826,390 + +0.6
826,390 + -0.8
826,390 + +0.8
826,390 + -0.3
826,390 + +0.8
826,390 + +0.3
826,390 + +0.4
826,390 + +0.2
826,390 + -0.0
826,390 + +0.3
826,390 + +4.0
826,390 + -1.1
826,390 + +0.5
826,390 + -0.0
826,391 - -0.9
826,391 - +0.9
826,391 - -1.0
826,391 - -0.4
826,391 - +0.4
826,469 + -0.9
826,470 - +1.2
826,470 - -0.5
826,470 - -0.2
826,539 + -0.1
826,871 - Ac3H11_2549 0.26 +0.6
827,045 - Ac3H11_2549 0.39 +1.2
827,216 + Ac3H11_2549 0.51 -0.0
827,217 - Ac3H11_2549 0.51 +0.2
827,217 - Ac3H11_2549 0.51 +0.1
827,410 + Ac3H11_2549 0.65 -0.0
827,411 - Ac3H11_2549 0.65 -0.1

Or see this region's nucleotide sequence