Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2431

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_2430 and Ac3H11_2431 are separated by 362 nucleotidesAc3H11_2431 and Ac3H11_2432 are separated by 24 nucleotides Ac3H11_2430 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 688,677 to 689,648 _2430 Ac3H11_2431 - ABC transporter ATP-binding protein, at 690,011 to 691,555 _2431 Ac3H11_2432 - Nucleoside ABC transporter, permease protein 1, at 691,580 to 692,641 _2432 Position (kb) 690 691 692Strain fitness (log2 ratio) -2 -1 0 1at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.154 kb on + strand, within Ac3H11_2430at 689.154 kb on + strand, within Ac3H11_2430at 689.243 kb on + strand, within Ac3H11_2430at 689.434 kb on - strand, within Ac3H11_2430at 689.434 kb on - strand, within Ac3H11_2430at 689.461 kb on + strand, within Ac3H11_2430at 689.461 kb on + strand, within Ac3H11_2430at 689.462 kb on - strand, within Ac3H11_2430at 689.462 kb on - strand, within Ac3H11_2430at 689.517 kb on + strand, within Ac3H11_2430at 689.518 kb on - strand, within Ac3H11_2430at 689.518 kb on - strand, within Ac3H11_2430at 689.686 kb on + strandat 689.686 kb on + strandat 689.686 kb on + strandat 689.687 kb on - strandat 689.754 kb on + strandat 689.754 kb on + strandat 689.755 kb on - strandat 690.010 kb on + strandat 690.010 kb on + strandat 690.010 kb on + strandat 690.010 kb on + strandat 690.010 kb on + strandat 690.011 kb on - strandat 690.011 kb on - strandat 690.011 kb on - strandat 690.011 kb on - strandat 690.021 kb on + strandat 690.021 kb on + strandat 690.021 kb on + strandat 690.022 kb on - strandat 690.022 kb on - strandat 690.022 kb on - strandat 690.022 kb on - strandat 690.170 kb on + strand, within Ac3H11_2431at 690.171 kb on - strand, within Ac3H11_2431at 690.171 kb on - strand, within Ac3H11_2431at 690.171 kb on - strand, within Ac3H11_2431at 690.912 kb on + strand, within Ac3H11_2431at 690.912 kb on + strand, within Ac3H11_2431at 690.912 kb on + strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 691.619 kb on + strandat 691.619 kb on + strandat 691.619 kb on + strandat 691.620 kb on - strandat 691.620 kb on - strandat 691.620 kb on - strandat 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.710 kb on - strand, within Ac3H11_2432at 691.710 kb on - strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.857 kb on - strand, within Ac3H11_2432at 691.857 kb on - strand, within Ac3H11_2432at 691.891 kb on + strand, within Ac3H11_2432at 691.891 kb on + strand, within Ac3H11_2432at 691.925 kb on + strand, within Ac3H11_2432at 691.925 kb on + strand, within Ac3H11_2432at 691.926 kb on - strand, within Ac3H11_2432at 692.397 kb on - strand, within Ac3H11_2432at 692.429 kb on + strand, within Ac3H11_2432at 692.429 kb on + strand, within Ac3H11_2432at 692.429 kb on + strand, within Ac3H11_2432at 692.555 kb on + strandat 692.555 kb on + strandat 692.555 kb on + strandat 692.555 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
689,112 + Ac3H11_2430 0.45 +0.0
689,112 + Ac3H11_2430 0.45 -0.1
689,112 + Ac3H11_2430 0.45 +0.7
689,112 + Ac3H11_2430 0.45 +0.8
689,112 + Ac3H11_2430 0.45 +0.1
689,113 - Ac3H11_2430 0.45 -0.1
689,113 - Ac3H11_2430 0.45 -0.2
689,113 - Ac3H11_2430 0.45 +0.4
689,154 + Ac3H11_2430 0.49 +0.4
689,154 + Ac3H11_2430 0.49 -0.5
689,243 + Ac3H11_2430 0.58 -0.2
689,434 - Ac3H11_2430 0.78 -0.9
689,434 - Ac3H11_2430 0.78 -0.1
689,461 + Ac3H11_2430 0.81 +0.7
689,461 + Ac3H11_2430 0.81 -0.3
689,462 - Ac3H11_2430 0.81 -0.4
689,462 - Ac3H11_2430 0.81 +0.4
689,517 + Ac3H11_2430 0.86 -0.2
689,518 - Ac3H11_2430 0.87 +1.0
689,518 - Ac3H11_2430 0.87 +0.6
689,686 + +0.5
689,686 + +0.5
689,686 + -0.1
689,687 - +1.7
689,754 + +0.0
689,754 + -0.2
689,755 - -0.4
690,010 + +0.3
690,010 + +0.3
690,010 + -2.3
690,010 + -0.2
690,010 + -1.1
690,011 - +0.5
690,011 - +0.8
690,011 - +0.6
690,011 - +1.4
690,021 + -0.8
690,021 + +0.4
690,021 + +0.4
690,022 - +1.3
690,022 - -1.3
690,022 - -1.0
690,022 - +0.3
690,170 + Ac3H11_2431 0.10 -0.1
690,171 - Ac3H11_2431 0.10 +1.1
690,171 - Ac3H11_2431 0.10 -1.4
690,171 - Ac3H11_2431 0.10 -0.4
690,912 + Ac3H11_2431 0.58 +0.3
690,912 + Ac3H11_2431 0.58 +0.1
690,912 + Ac3H11_2431 0.58 -0.1
690,913 - Ac3H11_2431 0.58 +0.7
690,913 - Ac3H11_2431 0.58 -0.5
690,913 - Ac3H11_2431 0.58 +0.0
690,913 - Ac3H11_2431 0.58 +1.5
690,913 - Ac3H11_2431 0.58 -1.5
690,913 - Ac3H11_2431 0.58 +0.8
690,913 - Ac3H11_2431 0.58 +1.0
691,619 + -0.1
691,619 + +0.7
691,619 + -0.5
691,620 - +0.0
691,620 - +1.7
691,620 - +0.2
691,709 + Ac3H11_2432 0.12 +0.1
691,709 + Ac3H11_2432 0.12 +0.9
691,709 + Ac3H11_2432 0.12 -0.1
691,709 + Ac3H11_2432 0.12 +0.6
691,709 + Ac3H11_2432 0.12 +0.3
691,709 + Ac3H11_2432 0.12 +0.1
691,709 + Ac3H11_2432 0.12 +1.1
691,709 + Ac3H11_2432 0.12 -0.8
691,710 - Ac3H11_2432 0.12 -0.7
691,710 - Ac3H11_2432 0.12 +0.3
691,856 + Ac3H11_2432 0.26 -0.9
691,856 + Ac3H11_2432 0.26 -0.2
691,856 + Ac3H11_2432 0.26 -0.0
691,856 + Ac3H11_2432 0.26 +0.6
691,856 + Ac3H11_2432 0.26 -1.1
691,857 - Ac3H11_2432 0.26 -0.5
691,857 - Ac3H11_2432 0.26 -0.1
691,891 + Ac3H11_2432 0.29 +0.5
691,891 + Ac3H11_2432 0.29 +0.7
691,925 + Ac3H11_2432 0.32 -0.2
691,925 + Ac3H11_2432 0.32 -0.8
691,926 - Ac3H11_2432 0.33 -0.1
692,397 - Ac3H11_2432 0.77 -0.1
692,429 + Ac3H11_2432 0.80 +0.1
692,429 + Ac3H11_2432 0.80 -0.3
692,429 + Ac3H11_2432 0.80 -0.6
692,555 + +0.3
692,555 + +0.1
692,555 + -0.5
692,555 + -0.6

Or see this region's nucleotide sequence