Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33135

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33130 and AZOBR_RS33135 are separated by 100 nucleotidesAZOBR_RS33135 and AZOBR_RS33140 are separated by 100 nucleotides AZOBR_RS33130: AZOBR_RS33130 - hypothetical protein, at 119,242 to 120,483 _RS33130 AZOBR_RS33135: AZOBR_RS33135 - hypothetical protein, at 120,584 to 121,303 _RS33135 AZOBR_RS33140: AZOBR_RS33140 - hypothetical protein, at 121,404 to 122,414 _RS33140 Position (kb) 120 121 122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 119.789 kb on + strand, within AZOBR_RS33130at 119.858 kb on + strand, within AZOBR_RS33130at 119.859 kb on - strand, within AZOBR_RS33130at 119.868 kb on - strand, within AZOBR_RS33130at 120.192 kb on - strand, within AZOBR_RS33130at 120.409 kb on + strandat 120.410 kb on - strandat 120.783 kb on + strand, within AZOBR_RS33135at 120.784 kb on - strand, within AZOBR_RS33135at 120.786 kb on + strand, within AZOBR_RS33135at 120.786 kb on + strand, within AZOBR_RS33135at 120.787 kb on - strand, within AZOBR_RS33135at 120.787 kb on - strand, within AZOBR_RS33135at 120.894 kb on + strand, within AZOBR_RS33135at 120.895 kb on - strand, within AZOBR_RS33135at 120.996 kb on + strand, within AZOBR_RS33135at 120.997 kb on - strand, within AZOBR_RS33135at 120.997 kb on - strand, within AZOBR_RS33135at 121.510 kb on - strand, within AZOBR_RS33140at 121.510 kb on - strand, within AZOBR_RS33140at 121.533 kb on + strand, within AZOBR_RS33140at 121.534 kb on - strand, within AZOBR_RS33140at 122.002 kb on - strand, within AZOBR_RS33140

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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119,789 + AZOBR_RS33130 0.44 +1.6
119,858 + AZOBR_RS33130 0.50 +0.1
119,859 - AZOBR_RS33130 0.50 +0.9
119,868 - AZOBR_RS33130 0.50 +0.4
120,192 - AZOBR_RS33130 0.76 -0.1
120,409 + +0.9
120,410 - +0.5
120,783 + AZOBR_RS33135 0.28 -2.7
120,784 - AZOBR_RS33135 0.28 -2.3
120,786 + AZOBR_RS33135 0.28 -0.5
120,786 + AZOBR_RS33135 0.28 -3.1
120,787 - AZOBR_RS33135 0.28 -0.8
120,787 - AZOBR_RS33135 0.28 -0.5
120,894 + AZOBR_RS33135 0.43 -1.6
120,895 - AZOBR_RS33135 0.43 -0.8
120,996 + AZOBR_RS33135 0.57 -4.3
120,997 - AZOBR_RS33135 0.57 +0.2
120,997 - AZOBR_RS33135 0.57 +0.5
121,510 - AZOBR_RS33140 0.10 -0.3
121,510 - AZOBR_RS33140 0.10 +0.9
121,533 + AZOBR_RS33140 0.13 -0.3
121,534 - AZOBR_RS33140 0.13 +0.5
122,002 - AZOBR_RS33140 0.59 -0.1

Or see this region's nucleotide sequence