Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32205

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32190 and AZOBR_RS32195 are separated by 91 nucleotidesAZOBR_RS32195 and AZOBR_RS32200 are separated by 96 nucleotidesAZOBR_RS32200 and AZOBR_RS32205 are separated by 125 nucleotidesAZOBR_RS32205 and AZOBR_RS32210 overlap by 4 nucleotidesAZOBR_RS32210 and AZOBR_RS32215 are separated by 304 nucleotidesAZOBR_RS32215 and AZOBR_RS32220 are separated by 22 nucleotides AZOBR_RS32190: AZOBR_RS32190 - glycerol-3-phosphate dehydrogenase subunit C, at 589,497 to 589,766 _RS32190 AZOBR_RS32195: AZOBR_RS32195 - glycerol-3-phosphate dehydrogenase subunit C, at 589,858 to 590,124 _RS32195 AZOBR_RS32200: AZOBR_RS32200 - glycerol-3-phosphate dehydrogenase subunit C, at 590,221 to 590,493 _RS32200 AZOBR_RS32205: AZOBR_RS32205 - hypothetical protein, at 590,619 to 590,852 _RS32205 AZOBR_RS32210: AZOBR_RS32210 - hypothetical protein, at 590,849 to 591,100 _RS32210 AZOBR_RS32215: AZOBR_RS32215 - hypothetical protein, at 591,405 to 591,755 _RS32215 AZOBR_RS32220: AZOBR_RS32220 - hypothetical protein, at 591,778 to 592,857 _RS32220 Position (kb) 590 591Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 589.665 kb on + strand, within AZOBR_RS32190at 589.666 kb on - strand, within AZOBR_RS32190at 589.666 kb on - strand, within AZOBR_RS32190at 589.666 kb on - strand, within AZOBR_RS32190at 589.849 kb on + strandat 589.960 kb on + strand, within AZOBR_RS32195at 589.961 kb on - strand, within AZOBR_RS32195at 590.026 kb on + strand, within AZOBR_RS32195at 590.026 kb on + strand, within AZOBR_RS32195at 590.027 kb on - strand, within AZOBR_RS32195at 590.027 kb on - strand, within AZOBR_RS32195at 590.027 kb on - strand, within AZOBR_RS32195at 590.072 kb on - strand, within AZOBR_RS32195at 590.206 kb on + strandat 590.206 kb on + strandat 590.206 kb on + strandat 590.206 kb on + strandat 590.206 kb on + strandat 590.206 kb on + strandat 590.207 kb on - strandat 590.389 kb on + strand, within AZOBR_RS32200at 590.389 kb on + strand, within AZOBR_RS32200at 590.389 kb on + strand, within AZOBR_RS32200at 590.389 kb on + strand, within AZOBR_RS32200at 590.390 kb on - strand, within AZOBR_RS32200at 590.491 kb on + strandat 590.491 kb on + strandat 590.492 kb on - strandat 590.566 kb on - strandat 590.566 kb on - strandat 590.715 kb on + strand, within AZOBR_RS32205at 590.715 kb on + strand, within AZOBR_RS32205at 590.715 kb on + strand, within AZOBR_RS32205at 590.715 kb on + strand, within AZOBR_RS32205at 590.715 kb on + strand, within AZOBR_RS32205at 590.715 kb on + strand, within AZOBR_RS32205at 590.716 kb on - strand, within AZOBR_RS32205at 590.716 kb on - strand, within AZOBR_RS32205at 590.716 kb on - strand, within AZOBR_RS32205at 591.449 kb on - strand, within AZOBR_RS32215at 591.449 kb on - strand, within AZOBR_RS32215at 591.489 kb on - strand, within AZOBR_RS32215at 591.513 kb on + strand, within AZOBR_RS32215at 591.513 kb on + strand, within AZOBR_RS32215at 591.513 kb on + strand, within AZOBR_RS32215at 591.514 kb on - strand, within AZOBR_RS32215at 591.514 kb on - strand, within AZOBR_RS32215at 591.645 kb on + strand, within AZOBR_RS32215at 591.645 kb on + strand, within AZOBR_RS32215at 591.645 kb on + strand, within AZOBR_RS32215at 591.646 kb on - strand, within AZOBR_RS32215at 591.646 kb on - strand, within AZOBR_RS32215at 591.646 kb on - strand, within AZOBR_RS32215at 591.646 kb on - strand, within AZOBR_RS32215at 591.646 kb on - strand, within AZOBR_RS32215at 591.737 kb on + strandat 591.737 kb on + strandat 591.737 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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589,665 + AZOBR_RS32190 0.62 -0.4
589,666 - AZOBR_RS32190 0.63 -1.5
589,666 - AZOBR_RS32190 0.63 -0.4
589,666 - AZOBR_RS32190 0.63 +0.9
589,849 + -0.9
589,960 + AZOBR_RS32195 0.38 -0.8
589,961 - AZOBR_RS32195 0.39 +0.4
590,026 + AZOBR_RS32195 0.63 +0.1
590,026 + AZOBR_RS32195 0.63 -0.6
590,027 - AZOBR_RS32195 0.63 +0.3
590,027 - AZOBR_RS32195 0.63 -0.3
590,027 - AZOBR_RS32195 0.63 -0.3
590,072 - AZOBR_RS32195 0.80 -0.8
590,206 + +0.4
590,206 + -0.3
590,206 + -0.1
590,206 + +0.1
590,206 + -0.7
590,206 + -1.1
590,207 - +0.8
590,389 + AZOBR_RS32200 0.62 -3.9
590,389 + AZOBR_RS32200 0.62 +0.1
590,389 + AZOBR_RS32200 0.62 +1.2
590,389 + AZOBR_RS32200 0.62 +0.1
590,390 - AZOBR_RS32200 0.62 +0.3
590,491 + +1.7
590,491 + +0.5
590,492 - +1.5
590,566 - +1.1
590,566 - +0.7
590,715 + AZOBR_RS32205 0.41 +1.3
590,715 + AZOBR_RS32205 0.41 -0.7
590,715 + AZOBR_RS32205 0.41 -0.2
590,715 + AZOBR_RS32205 0.41 +1.4
590,715 + AZOBR_RS32205 0.41 +0.6
590,715 + AZOBR_RS32205 0.41 +1.3
590,716 - AZOBR_RS32205 0.41 -0.6
590,716 - AZOBR_RS32205 0.41 +1.0
590,716 - AZOBR_RS32205 0.41 +0.1
591,449 - AZOBR_RS32215 0.13 +1.0
591,449 - AZOBR_RS32215 0.13 -3.4
591,489 - AZOBR_RS32215 0.24 -0.2
591,513 + AZOBR_RS32215 0.31 -4.3
591,513 + AZOBR_RS32215 0.31 +1.4
591,513 + AZOBR_RS32215 0.31 -0.8
591,514 - AZOBR_RS32215 0.31 -3.4
591,514 - AZOBR_RS32215 0.31 +0.6
591,645 + AZOBR_RS32215 0.68 +2.1
591,645 + AZOBR_RS32215 0.68 -0.9
591,645 + AZOBR_RS32215 0.68 -3.0
591,646 - AZOBR_RS32215 0.69 -0.2
591,646 - AZOBR_RS32215 0.69 +0.1
591,646 - AZOBR_RS32215 0.69 +0.3
591,646 - AZOBR_RS32215 0.69 -0.7
591,646 - AZOBR_RS32215 0.69 +0.0
591,737 + -0.2
591,737 + +1.3
591,737 + -0.8

Or see this region's nucleotide sequence