Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32110

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32100 and AZOBR_RS32105 overlap by 4 nucleotidesAZOBR_RS32105 and AZOBR_RS32110 are separated by 11 nucleotidesAZOBR_RS32110 and AZOBR_RS32115 are separated by 107 nucleotidesAZOBR_RS32115 and AZOBR_RS32120 are separated by 391 nucleotides AZOBR_RS32100: AZOBR_RS32100 - cytochrome C, at 572,893 to 573,513 _RS32100 AZOBR_RS32105: AZOBR_RS32105 - nitrate reductase, at 573,510 to 573,992 _RS32105 AZOBR_RS32110: AZOBR_RS32110 - nitrate reductase catalytic subunit, at 574,004 to 576,514 _RS32110 AZOBR_RS32115: AZOBR_RS32115 - nitrate reductase, at 576,622 to 576,855 _RS32115 AZOBR_RS32120: AZOBR_RS32120 - hypothetical protein, at 577,247 to 577,744 _RS32120 Position (kb) 574 575 576 577Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 573.005 kb on + strand, within AZOBR_RS32100at 573.006 kb on - strand, within AZOBR_RS32100at 573.006 kb on - strand, within AZOBR_RS32100at 573.006 kb on - strand, within AZOBR_RS32100at 573.006 kb on - strand, within AZOBR_RS32100at 573.317 kb on + strand, within AZOBR_RS32100at 573.620 kb on - strand, within AZOBR_RS32105at 573.761 kb on - strand, within AZOBR_RS32105at 573.761 kb on - strand, within AZOBR_RS32105at 574.392 kb on + strand, within AZOBR_RS32110at 574.393 kb on - strand, within AZOBR_RS32110at 574.393 kb on - strand, within AZOBR_RS32110at 574.393 kb on - strand, within AZOBR_RS32110at 574.435 kb on - strand, within AZOBR_RS32110at 574.464 kb on + strand, within AZOBR_RS32110at 574.465 kb on - strand, within AZOBR_RS32110at 574.545 kb on + strand, within AZOBR_RS32110at 574.545 kb on + strand, within AZOBR_RS32110at 574.545 kb on + strand, within AZOBR_RS32110at 574.545 kb on + strand, within AZOBR_RS32110at 574.546 kb on - strand, within AZOBR_RS32110at 574.546 kb on - strand, within AZOBR_RS32110at 574.546 kb on - strand, within AZOBR_RS32110at 574.546 kb on - strand, within AZOBR_RS32110at 574.555 kb on - strand, within AZOBR_RS32110at 574.597 kb on - strand, within AZOBR_RS32110at 574.623 kb on + strand, within AZOBR_RS32110at 574.623 kb on + strand, within AZOBR_RS32110at 574.624 kb on - strand, within AZOBR_RS32110at 574.624 kb on - strand, within AZOBR_RS32110at 574.624 kb on - strand, within AZOBR_RS32110at 574.624 kb on - strand, within AZOBR_RS32110at 574.657 kb on - strand, within AZOBR_RS32110at 574.707 kb on + strand, within AZOBR_RS32110at 574.707 kb on + strand, within AZOBR_RS32110at 574.708 kb on - strand, within AZOBR_RS32110at 574.708 kb on - strand, within AZOBR_RS32110at 574.708 kb on - strand, within AZOBR_RS32110at 574.708 kb on - strand, within AZOBR_RS32110at 574.963 kb on - strand, within AZOBR_RS32110at 575.010 kb on + strand, within AZOBR_RS32110at 575.010 kb on + strand, within AZOBR_RS32110at 575.010 kb on + strand, within AZOBR_RS32110at 575.011 kb on - strand, within AZOBR_RS32110at 575.067 kb on + strand, within AZOBR_RS32110at 575.331 kb on + strand, within AZOBR_RS32110at 575.331 kb on + strand, within AZOBR_RS32110at 575.331 kb on + strand, within AZOBR_RS32110at 575.331 kb on + strand, within AZOBR_RS32110at 575.332 kb on - strand, within AZOBR_RS32110at 575.488 kb on - strand, within AZOBR_RS32110at 575.688 kb on + strand, within AZOBR_RS32110at 575.689 kb on - strand, within AZOBR_RS32110at 575.689 kb on - strand, within AZOBR_RS32110at 575.689 kb on - strand, within AZOBR_RS32110at 575.689 kb on - strand, within AZOBR_RS32110at 575.763 kb on + strand, within AZOBR_RS32110at 575.763 kb on + strand, within AZOBR_RS32110at 575.763 kb on + strand, within AZOBR_RS32110at 575.764 kb on - strand, within AZOBR_RS32110at 575.764 kb on - strand, within AZOBR_RS32110at 575.764 kb on - strand, within AZOBR_RS32110at 575.898 kb on + strand, within AZOBR_RS32110at 575.898 kb on + strand, within AZOBR_RS32110at 576.028 kb on - strand, within AZOBR_RS32110at 576.223 kb on - strand, within AZOBR_RS32110at 576.244 kb on - strand, within AZOBR_RS32110at 576.244 kb on - strand, within AZOBR_RS32110at 576.259 kb on + strand, within AZOBR_RS32110at 576.493 kb on - strandat 576.514 kb on + strandat 576.515 kb on - strandat 576.626 kb on + strandat 576.626 kb on + strandat 576.635 kb on + strandat 576.636 kb on - strandat 576.636 kb on - strandat 576.891 kb on + strandat 577.138 kb on + strandat 577.138 kb on + strandat 577.139 kb on - strandat 577.149 kb on - strandat 577.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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573,005 + AZOBR_RS32100 0.18 +2.6
573,006 - AZOBR_RS32100 0.18 -0.2
573,006 - AZOBR_RS32100 0.18 +1.4
573,006 - AZOBR_RS32100 0.18 +1.0
573,006 - AZOBR_RS32100 0.18 +1.4
573,317 + AZOBR_RS32100 0.68 +0.2
573,620 - AZOBR_RS32105 0.23 +0.1
573,761 - AZOBR_RS32105 0.52 -2.0
573,761 - AZOBR_RS32105 0.52 -2.7
574,392 + AZOBR_RS32110 0.15 -3.8
574,393 - AZOBR_RS32110 0.15 -0.2
574,393 - AZOBR_RS32110 0.15 -1.7
574,393 - AZOBR_RS32110 0.15 +0.6
574,435 - AZOBR_RS32110 0.17 -1.7
574,464 + AZOBR_RS32110 0.18 +1.3
574,465 - AZOBR_RS32110 0.18 +0.8
574,545 + AZOBR_RS32110 0.22 +0.8
574,545 + AZOBR_RS32110 0.22 -3.3
574,545 + AZOBR_RS32110 0.22 +0.2
574,545 + AZOBR_RS32110 0.22 -1.2
574,546 - AZOBR_RS32110 0.22 +0.3
574,546 - AZOBR_RS32110 0.22 -1.7
574,546 - AZOBR_RS32110 0.22 +0.4
574,546 - AZOBR_RS32110 0.22 +0.6
574,555 - AZOBR_RS32110 0.22 -0.1
574,597 - AZOBR_RS32110 0.24 +1.2
574,623 + AZOBR_RS32110 0.25 +0.8
574,623 + AZOBR_RS32110 0.25 -0.2
574,624 - AZOBR_RS32110 0.25 -0.3
574,624 - AZOBR_RS32110 0.25 +0.7
574,624 - AZOBR_RS32110 0.25 -1.1
574,624 - AZOBR_RS32110 0.25 +0.6
574,657 - AZOBR_RS32110 0.26 -2.2
574,707 + AZOBR_RS32110 0.28 +0.8
574,707 + AZOBR_RS32110 0.28 +3.2
574,708 - AZOBR_RS32110 0.28 -2.5
574,708 - AZOBR_RS32110 0.28 -2.1
574,708 - AZOBR_RS32110 0.28 -1.7
574,708 - AZOBR_RS32110 0.28 -1.3
574,963 - AZOBR_RS32110 0.38 -0.2
575,010 + AZOBR_RS32110 0.40 -0.5
575,010 + AZOBR_RS32110 0.40 -3.4
575,010 + AZOBR_RS32110 0.40 -0.1
575,011 - AZOBR_RS32110 0.40 -0.4
575,067 + AZOBR_RS32110 0.42 -1.9
575,331 + AZOBR_RS32110 0.53 -0.1
575,331 + AZOBR_RS32110 0.53 -1.0
575,331 + AZOBR_RS32110 0.53 +0.3
575,331 + AZOBR_RS32110 0.53 -0.4
575,332 - AZOBR_RS32110 0.53 +0.3
575,488 - AZOBR_RS32110 0.59 -0.3
575,688 + AZOBR_RS32110 0.67 -0.5
575,689 - AZOBR_RS32110 0.67 -4.4
575,689 - AZOBR_RS32110 0.67 -0.2
575,689 - AZOBR_RS32110 0.67 -0.6
575,689 - AZOBR_RS32110 0.67 -0.4
575,763 + AZOBR_RS32110 0.70 -0.1
575,763 + AZOBR_RS32110 0.70 +0.3
575,763 + AZOBR_RS32110 0.70 -0.2
575,764 - AZOBR_RS32110 0.70 -2.1
575,764 - AZOBR_RS32110 0.70 -2.3
575,764 - AZOBR_RS32110 0.70 -3.4
575,898 + AZOBR_RS32110 0.75 +1.1
575,898 + AZOBR_RS32110 0.75 +0.4
576,028 - AZOBR_RS32110 0.81 +0.2
576,223 - AZOBR_RS32110 0.88 +1.1
576,244 - AZOBR_RS32110 0.89 -0.1
576,244 - AZOBR_RS32110 0.89 +1.1
576,259 + AZOBR_RS32110 0.90 -0.1
576,493 - -0.4
576,514 + -2.2
576,515 - -3.8
576,626 + +0.6
576,626 + +0.7
576,635 + -1.3
576,636 - -2.2
576,636 - +0.7
576,891 + -1.6
577,138 + +0.1
577,138 + +0.1
577,139 - -3.1
577,149 - +0.2
577,249 - -1.0

Or see this region's nucleotide sequence