Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31690

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31685 and AZOBR_RS31690 are separated by 636 nucleotides AZOBR_RS31685: AZOBR_RS31685 - hypothetical protein, at 476,556 to 477,035 _RS31685 AZOBR_RS31690: AZOBR_RS31690 - lactate dehydrogenase, at 477,672 to 478,655 _RS31690 Position (kb) 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2at 476.701 kb on + strand, within AZOBR_RS31685at 477.164 kb on + strandat 477.508 kb on + strandat 478.390 kb on - strand, within AZOBR_RS31690at 478.390 kb on - strand, within AZOBR_RS31690at 478.816 kb on + strandat 479.105 kb on + strandat 479.654 kb on + strandat 479.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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476,701 + AZOBR_RS31685 0.30 +1.6
477,164 + +0.3
477,508 + +2.2
478,390 - AZOBR_RS31690 0.73 -2.4
478,390 - AZOBR_RS31690 0.73 +0.4
478,816 + +2.0
479,105 + +0.1
479,654 + -2.1
479,654 + +0.4

Or see this region's nucleotide sequence