Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31680 and AZOBR_RS31685 are separated by 39 nucleotides AZOBR_RS31685 and AZOBR_RS31690 are separated by 636 nucleotides
AZOBR_RS31680: AZOBR_RS31680 - diguanylate cyclase, at 475,500 to 476,516
_RS31680
AZOBR_RS31685: AZOBR_RS31685 - hypothetical protein, at 476,556 to 477,035
_RS31685
AZOBR_RS31690: AZOBR_RS31690 - lactate dehydrogenase, at 477,672 to 478,655
_RS31690
Position (kb) 476
477
478 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 475.617 kb on + strand, within AZOBR_RS31680 at 475.617 kb on + strand, within AZOBR_RS31680 at 475.617 kb on + strand, within AZOBR_RS31680 at 475.618 kb on - strand, within AZOBR_RS31680 at 475.618 kb on - strand, within AZOBR_RS31680 at 475.618 kb on - strand, within AZOBR_RS31680 at 475.618 kb on - strand, within AZOBR_RS31680 at 475.758 kb on + strand, within AZOBR_RS31680 at 475.758 kb on + strand, within AZOBR_RS31680 at 475.759 kb on - strand at 475.759 kb on - strand, within AZOBR_RS31680 at 475.824 kb on + strand, within AZOBR_RS31680 at 475.824 kb on + strand, within AZOBR_RS31680 at 475.824 kb on + strand, within AZOBR_RS31680 at 475.824 kb on + strand, within AZOBR_RS31680 at 475.825 kb on - strand, within AZOBR_RS31680 at 475.825 kb on - strand, within AZOBR_RS31680 at 475.825 kb on - strand, within AZOBR_RS31680 at 475.825 kb on - strand, within AZOBR_RS31680 at 476.016 kb on + strand, within AZOBR_RS31680 at 476.017 kb on - strand, within AZOBR_RS31680 at 476.017 kb on - strand, within AZOBR_RS31680 at 476.022 kb on + strand, within AZOBR_RS31680 at 476.023 kb on - strand, within AZOBR_RS31680 at 476.023 kb on - strand, within AZOBR_RS31680 at 476.023 kb on - strand, within AZOBR_RS31680 at 476.023 kb on - strand, within AZOBR_RS31680 at 476.478 kb on + strand at 476.478 kb on + strand at 476.478 kb on + strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.479 kb on - strand at 476.557 kb on + strand at 476.602 kb on + strand at 476.603 kb on - strand at 476.701 kb on + strand, within AZOBR_RS31685 at 477.164 kb on + strand at 477.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 475,617 + AZOBR_RS31680 0.12 +0.8 475,617 + AZOBR_RS31680 0.12 +0.5 475,617 + AZOBR_RS31680 0.12 -4.1 475,618 - AZOBR_RS31680 0.12 -1.5 475,618 - AZOBR_RS31680 0.12 -2.8 475,618 - AZOBR_RS31680 0.12 -1.4 475,618 - AZOBR_RS31680 0.12 -0.5 475,758 + AZOBR_RS31680 0.25 +0.0 475,758 + AZOBR_RS31680 0.25 +0.4 475,759 - -0.1 475,759 - AZOBR_RS31680 0.25 -0.1 475,824 + AZOBR_RS31680 0.32 +0.5 475,824 + AZOBR_RS31680 0.32 +0.2 475,824 + AZOBR_RS31680 0.32 +0.2 475,824 + AZOBR_RS31680 0.32 +0.6 475,825 - AZOBR_RS31680 0.32 +0.5 475,825 - AZOBR_RS31680 0.32 +0.0 475,825 - AZOBR_RS31680 0.32 -2.2 475,825 - AZOBR_RS31680 0.32 -3.7 476,016 + AZOBR_RS31680 0.51 +1.1 476,017 - AZOBR_RS31680 0.51 +0.8 476,017 - AZOBR_RS31680 0.51 +0.3 476,022 + AZOBR_RS31680 0.51 -0.0 476,023 - AZOBR_RS31680 0.51 -0.1 476,023 - AZOBR_RS31680 0.51 +0.8 476,023 - AZOBR_RS31680 0.51 -1.2 476,023 - AZOBR_RS31680 0.51 -0.0 476,478 + +0.7 476,478 + +0.7 476,478 + -2.1 476,479 - +0.6 476,479 - +0.7 476,479 - -4.2 476,479 - +1.4 476,479 - +0.1 476,479 - +1.9 476,479 - -0.2 476,479 - -1.3 476,479 - -1.5 476,479 - -1.2 476,479 - +0.0 476,479 - +0.4 476,479 - +0.0 476,479 - +0.8 476,557 + +2.0 476,602 + +0.5 476,603 - -0.8 476,701 + AZOBR_RS31685 0.30 +1.6 477,164 + +0.3 477,508 + +2.2
Or see this region's nucleotide sequence