Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31260 and AZOBR_RS31265 are separated by 17 nucleotides AZOBR_RS31265 and AZOBR_RS31270 are separated by 264 nucleotides
AZOBR_RS31260: AZOBR_RS31260 - dihydroxy-acid dehydratase, at 378,250 to 380,076
_RS31260
AZOBR_RS31265: AZOBR_RS31265 - lysophospholipase, at 380,094 to 381,314
_RS31265
AZOBR_RS31270: AZOBR_RS31270 - aldose 1-epimerase, at 381,579 to 382,652
_RS31270
Position (kb) 380
381
382 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 379.234 kb on + strand, within AZOBR_RS31260 at 379.504 kb on + strand, within AZOBR_RS31260 at 379.504 kb on + strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.573 kb on + strand, within AZOBR_RS31260 at 379.574 kb on - strand, within AZOBR_RS31260 at 379.574 kb on - strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.616 kb on - strand, within AZOBR_RS31260 at 380.029 kb on + strand at 380.030 kb on - strand at 380.350 kb on + strand, within AZOBR_RS31265 at 380.351 kb on - strand, within AZOBR_RS31265 at 380.351 kb on - strand, within AZOBR_RS31265 at 380.738 kb on - strand, within AZOBR_RS31265 at 380.738 kb on - strand, within AZOBR_RS31265 at 380.783 kb on - strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 381.040 kb on + strand, within AZOBR_RS31265 at 381.085 kb on + strand, within AZOBR_RS31265 at 381.085 kb on + strand, within AZOBR_RS31265 at 381.086 kb on - strand, within AZOBR_RS31265 at 381.086 kb on - strand, within AZOBR_RS31265 at 381.175 kb on + strand, within AZOBR_RS31265 at 381.176 kb on - strand, within AZOBR_RS31265 at 381.178 kb on + strand, within AZOBR_RS31265 at 381.178 kb on + strand, within AZOBR_RS31265 at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.589 kb on - strand at 381.693 kb on + strand, within AZOBR_RS31270 at 381.694 kb on - strand, within AZOBR_RS31270 at 381.763 kb on - strand, within AZOBR_RS31270 at 381.822 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 379,234 + AZOBR_RS31260 0.54 +0.6 379,504 + AZOBR_RS31260 0.69 -2.8 379,504 + AZOBR_RS31260 0.69 +1.3 379,505 - AZOBR_RS31260 0.69 +0.4 379,505 - AZOBR_RS31260 0.69 +0.2 379,505 - AZOBR_RS31260 0.69 +0.6 379,505 - AZOBR_RS31260 0.69 -5.1 379,573 + AZOBR_RS31260 0.72 +1.2 379,574 - AZOBR_RS31260 0.72 +3.1 379,574 - AZOBR_RS31260 0.72 +0.2 379,615 + AZOBR_RS31260 0.75 -1.2 379,615 + AZOBR_RS31260 0.75 -0.1 379,615 + AZOBR_RS31260 0.75 +0.1 379,616 - AZOBR_RS31260 0.75 -0.1 380,029 + -1.4 380,030 - -1.2 380,350 + AZOBR_RS31265 0.21 +0.9 380,351 - AZOBR_RS31265 0.21 +3.0 380,351 - AZOBR_RS31265 0.21 +0.3 380,738 - AZOBR_RS31265 0.53 -2.9 380,738 - AZOBR_RS31265 0.53 -0.9 380,783 - AZOBR_RS31265 0.56 +0.9 380,818 + AZOBR_RS31265 0.59 +0.2 380,818 + AZOBR_RS31265 0.59 +0.7 380,818 + AZOBR_RS31265 0.59 -2.0 380,818 + AZOBR_RS31265 0.59 -1.0 380,818 + AZOBR_RS31265 0.59 +0.4 380,819 - AZOBR_RS31265 0.59 +0.7 380,819 - AZOBR_RS31265 0.59 +1.0 380,819 - AZOBR_RS31265 0.59 +0.8 381,040 + AZOBR_RS31265 0.77 -0.4 381,085 + AZOBR_RS31265 0.81 -1.6 381,085 + AZOBR_RS31265 0.81 +1.0 381,086 - AZOBR_RS31265 0.81 -3.6 381,086 - AZOBR_RS31265 0.81 +2.1 381,175 + AZOBR_RS31265 0.89 -0.4 381,176 - AZOBR_RS31265 0.89 +0.8 381,178 + AZOBR_RS31265 0.89 +0.3 381,178 + AZOBR_RS31265 0.89 +0.0 381,256 + -0.8 381,256 + -2.1 381,256 + +0.3 381,256 + +0.8 381,256 + -0.4 381,256 + +0.6 381,257 - -0.8 381,257 - +1.0 381,257 - -3.9 381,257 - -1.8 381,257 - -0.2 381,589 - +1.5 381,693 + AZOBR_RS31270 0.11 -0.1 381,694 - AZOBR_RS31270 0.11 +2.7 381,763 - AZOBR_RS31270 0.17 +0.3 381,822 + AZOBR_RS31270 0.23 +1.3 381,981 + AZOBR_RS31270 0.37 +0.1 381,981 + AZOBR_RS31270 0.37 +0.7 381,981 + AZOBR_RS31270 0.37 +1.6 381,982 - AZOBR_RS31270 0.38 +0.3 381,982 - AZOBR_RS31270 0.38 +0.9 381,982 - AZOBR_RS31270 0.38 +0.6 381,982 - AZOBR_RS31270 0.38 +0.7
Or see this region's nucleotide sequence