Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31245 and AZOBR_RS31250 overlap by 4 nucleotides AZOBR_RS31250 and AZOBR_RS31255 are separated by 8 nucleotides
AZOBR_RS31245: AZOBR_RS31245 - ABC transporter ATP-binding protein, at 374,388 to 375,944
_RS31245
AZOBR_RS31250: AZOBR_RS31250 - ABC transporter permease, at 375,941 to 377,152
_RS31250
AZOBR_RS31255: AZOBR_RS31255 - galactose 1-dehydrogenase, at 377,161 to 378,138
_RS31255
Position (kb) 375
376
377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 375.720 kb on + strand, within AZOBR_RS31245 at 375.720 kb on + strand, within AZOBR_RS31245 at 375.721 kb on - strand, within AZOBR_RS31245 at 375.729 kb on + strand, within AZOBR_RS31245 at 375.729 kb on + strand, within AZOBR_RS31245 at 375.729 kb on + strand, within AZOBR_RS31245 at 375.730 kb on - strand, within AZOBR_RS31245 at 375.730 kb on - strand, within AZOBR_RS31245 at 375.822 kb on + strand at 375.823 kb on - strand at 375.823 kb on - strand at 375.823 kb on - strand at 376.065 kb on - strand, within AZOBR_RS31250 at 376.065 kb on - strand, within AZOBR_RS31250 at 376.127 kb on + strand, within AZOBR_RS31250 at 376.127 kb on + strand, within AZOBR_RS31250 at 376.127 kb on + strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.659 kb on - strand at 376.659 kb on - strand, within AZOBR_RS31250 at 376.659 kb on - strand, within AZOBR_RS31250 at 376.733 kb on + strand, within AZOBR_RS31250 at 376.734 kb on - strand, within AZOBR_RS31250 at 376.734 kb on - strand, within AZOBR_RS31250 at 376.841 kb on + strand, within AZOBR_RS31250 at 377.132 kb on + strand at 377.132 kb on + strand at 377.133 kb on - strand at 377.133 kb on - strand at 377.923 kb on - strand, within AZOBR_RS31255 at 378.004 kb on + strand, within AZOBR_RS31255 at 378.004 kb on + strand, within AZOBR_RS31255 at 378.016 kb on + strand, within AZOBR_RS31255 at 378.017 kb on - strand, within AZOBR_RS31255 at 378.136 kb on + strand at 378.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 375,720 + AZOBR_RS31245 0.86 -1.9 375,720 + AZOBR_RS31245 0.86 +0.1 375,721 - AZOBR_RS31245 0.86 +0.6 375,729 + AZOBR_RS31245 0.86 -2.9 375,729 + AZOBR_RS31245 0.86 +0.4 375,729 + AZOBR_RS31245 0.86 -0.1 375,730 - AZOBR_RS31245 0.86 +2.9 375,730 - AZOBR_RS31245 0.86 -1.1 375,822 + -1.1 375,823 - -0.5 375,823 - -0.4 375,823 - +1.1 376,065 - AZOBR_RS31250 0.10 -0.7 376,065 - AZOBR_RS31250 0.10 -0.8 376,127 + AZOBR_RS31250 0.15 -1.8 376,127 + AZOBR_RS31250 0.15 +1.1 376,127 + AZOBR_RS31250 0.15 -0.5 376,128 - AZOBR_RS31250 0.15 -0.8 376,128 - AZOBR_RS31250 0.15 -0.2 376,128 - AZOBR_RS31250 0.15 -2.9 376,128 - AZOBR_RS31250 0.15 -3.4 376,128 - AZOBR_RS31250 0.15 -0.3 376,128 - AZOBR_RS31250 0.15 -0.6 376,658 + AZOBR_RS31250 0.59 -1.8 376,658 + AZOBR_RS31250 0.59 +1.0 376,658 + AZOBR_RS31250 0.59 +0.2 376,658 + AZOBR_RS31250 0.59 +2.1 376,658 + AZOBR_RS31250 0.59 -3.0 376,659 - +2.2 376,659 - AZOBR_RS31250 0.59 +0.1 376,659 - AZOBR_RS31250 0.59 +1.4 376,733 + AZOBR_RS31250 0.65 +0.1 376,734 - AZOBR_RS31250 0.65 -2.9 376,734 - AZOBR_RS31250 0.65 +1.0 376,841 + AZOBR_RS31250 0.74 +0.9 377,132 + +0.7 377,132 + +1.3 377,133 - -0.5 377,133 - +1.4 377,923 - AZOBR_RS31255 0.78 -1.2 378,004 + AZOBR_RS31255 0.86 +0.8 378,004 + AZOBR_RS31255 0.86 -2.6 378,016 + AZOBR_RS31255 0.87 -3.4 378,017 - AZOBR_RS31255 0.88 +0.1 378,136 + -0.3 378,136 + -0.0
Or see this region's nucleotide sequence