Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31085 and AZOBR_RS31090 are separated by 196 nucleotides AZOBR_RS31090 and AZOBR_RS31095 are separated by 3 nucleotides AZOBR_RS31095 and AZOBR_RS31100 are separated by 237 nucleotides AZOBR_RS31100 and AZOBR_RS31105 are separated by 133 nucleotides
AZOBR_RS31085: AZOBR_RS31085 - hypothetical protein, at 339,006 to 339,752
_RS31085
AZOBR_RS31090: AZOBR_RS31090 - pseudouridine synthase, at 339,949 to 340,659
_RS31090
AZOBR_RS31095: AZOBR_RS31095 - hypothetical protein, at 340,663 to 341,670
_RS31095
AZOBR_RS31100: AZOBR_RS31100 - endonuclease III, at 341,908 to 342,300
_RS31100
AZOBR_RS31105: AZOBR_RS31105 - 8-amino-7-oxononanoate synthase, at 342,434 to 343,615
_RS31105
Position (kb) 340
341
342 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 340.243 kb on + strand, within AZOBR_RS31090 at 340.244 kb on - strand at 340.372 kb on + strand, within AZOBR_RS31090 at 340.372 kb on + strand, within AZOBR_RS31090 at 340.373 kb on - strand, within AZOBR_RS31090 at 340.492 kb on + strand, within AZOBR_RS31090 at 340.492 kb on + strand, within AZOBR_RS31090 at 340.493 kb on - strand, within AZOBR_RS31090 at 340.495 kb on + strand, within AZOBR_RS31090 at 340.495 kb on + strand, within AZOBR_RS31090 at 340.657 kb on + strand at 340.657 kb on + strand at 340.964 kb on + strand, within AZOBR_RS31095 at 340.964 kb on + strand, within AZOBR_RS31095 at 340.965 kb on - strand, within AZOBR_RS31095 at 341.310 kb on - strand, within AZOBR_RS31095 at 341.352 kb on - strand at 341.352 kb on - strand, within AZOBR_RS31095 at 341.652 kb on - strand at 341.839 kb on + strand at 341.839 kb on + strand at 341.839 kb on + strand at 341.839 kb on + strand at 341.839 kb on + strand at 341.839 kb on + strand at 341.840 kb on - strand at 341.840 kb on - strand at 341.840 kb on - strand at 341.840 kb on - strand at 342.032 kb on - strand, within AZOBR_RS31100 at 342.191 kb on + strand, within AZOBR_RS31100 at 342.198 kb on - strand, within AZOBR_RS31100 at 342.278 kb on + strand at 342.278 kb on + strand at 342.278 kb on + strand at 342.278 kb on + strand at 342.279 kb on - strand at 342.279 kb on - strand at 342.279 kb on - strand at 342.279 kb on - strand at 342.279 kb on - strand at 342.279 kb on - strand at 342.279 kb on - strand at 342.354 kb on - strand at 342.354 kb on - strand at 342.385 kb on + strand at 342.419 kb on + strand at 342.582 kb on - strand, within AZOBR_RS31105
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 340,243 + AZOBR_RS31090 0.41 +1.1 340,244 - +2.1 340,372 + AZOBR_RS31090 0.59 +0.3 340,372 + AZOBR_RS31090 0.59 +0.2 340,373 - AZOBR_RS31090 0.60 +0.3 340,492 + AZOBR_RS31090 0.76 +0.2 340,492 + AZOBR_RS31090 0.76 -1.5 340,493 - AZOBR_RS31090 0.77 -3.9 340,495 + AZOBR_RS31090 0.77 -0.8 340,495 + AZOBR_RS31090 0.77 -0.6 340,657 + +0.5 340,657 + -3.4 340,964 + AZOBR_RS31095 0.30 +0.7 340,964 + AZOBR_RS31095 0.30 +1.7 340,965 - AZOBR_RS31095 0.30 -4.0 341,310 - AZOBR_RS31095 0.64 -0.4 341,352 - +3.3 341,352 - AZOBR_RS31095 0.68 -0.9 341,652 - -2.3 341,839 + +0.1 341,839 + -0.3 341,839 + +0.7 341,839 + -3.5 341,839 + -1.2 341,839 + -0.1 341,840 - +0.9 341,840 - +0.2 341,840 - -1.3 341,840 - +0.1 342,032 - AZOBR_RS31100 0.32 +1.4 342,191 + AZOBR_RS31100 0.72 +0.2 342,198 - AZOBR_RS31100 0.74 -0.3 342,278 + +0.4 342,278 + +1.0 342,278 + +1.1 342,278 + -0.3 342,279 - +0.7 342,279 - -0.4 342,279 - +0.1 342,279 - +0.3 342,279 - -0.3 342,279 - +0.1 342,279 - +0.6 342,354 - +2.3 342,354 - +0.1 342,385 + -1.1 342,419 + +0.1 342,582 - AZOBR_RS31105 0.13 +0.2
Or see this region's nucleotide sequence