Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31065 and AZOBR_RS31070 overlap by 4 nucleotides AZOBR_RS31070 and AZOBR_RS31075 are separated by 73 nucleotides AZOBR_RS31075 and AZOBR_RS31080 are separated by 133 nucleotides AZOBR_RS31080 and AZOBR_RS31085 are separated by 57 nucleotides
AZOBR_RS31065: AZOBR_RS31065 - hypothetical protein, at 335,990 to 336,550
_RS31065
AZOBR_RS31070: AZOBR_RS31070 - hypothetical protein, at 336,547 to 337,155
_RS31070
AZOBR_RS31075: AZOBR_RS31075 - UTP--glucose-1-phosphate uridylyltransferase, at 337,229 to 338,098
_RS31075
AZOBR_RS31080: AZOBR_RS31080 - hypothetical protein, at 338,232 to 338,948
_RS31080
AZOBR_RS31085: AZOBR_RS31085 - hypothetical protein, at 339,006 to 339,752
_RS31085
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 336.398 kb on + strand, within AZOBR_RS31065 at 336.399 kb on - strand, within AZOBR_RS31065 at 336.565 kb on + strand at 336.565 kb on + strand at 336.566 kb on - strand at 336.710 kb on - strand, within AZOBR_RS31070 at 336.710 kb on - strand, within AZOBR_RS31070 at 336.827 kb on - strand, within AZOBR_RS31070 at 337.237 kb on - strand at 338.281 kb on + strand at 338.282 kb on - strand at 338.282 kb on - strand at 338.340 kb on + strand, within AZOBR_RS31080 at 338.341 kb on - strand, within AZOBR_RS31080 at 338.378 kb on + strand, within AZOBR_RS31080 at 338.383 kb on + strand, within AZOBR_RS31080 at 338.383 kb on + strand, within AZOBR_RS31080 at 338.384 kb on - strand, within AZOBR_RS31080 at 338.403 kb on - strand, within AZOBR_RS31080 at 338.403 kb on - strand, within AZOBR_RS31080 at 338.674 kb on + strand, within AZOBR_RS31080 at 338.674 kb on + strand, within AZOBR_RS31080 at 338.675 kb on - strand, within AZOBR_RS31080 at 338.991 kb on + strand at 338.992 kb on - strand at 339.007 kb on + strand at 339.008 kb on - strand at 339.008 kb on - strand at 339.097 kb on + strand, within AZOBR_RS31085 at 339.097 kb on + strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085 at 339.098 kb on - strand, within AZOBR_RS31085
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 336,398 + AZOBR_RS31065 0.73 -3.3 336,399 - AZOBR_RS31065 0.73 -1.9 336,565 + +0.1 336,565 + -0.5 336,566 - -0.8 336,710 - AZOBR_RS31070 0.27 -0.9 336,710 - AZOBR_RS31070 0.27 -0.2 336,827 - AZOBR_RS31070 0.46 -0.3 337,237 - -1.7 338,281 + +0.4 338,282 - +0.7 338,282 - +0.3 338,340 + AZOBR_RS31080 0.15 -2.4 338,341 - AZOBR_RS31080 0.15 -2.0 338,378 + AZOBR_RS31080 0.20 +0.6 338,383 + AZOBR_RS31080 0.21 +0.3 338,383 + AZOBR_RS31080 0.21 +0.3 338,384 - AZOBR_RS31080 0.21 +0.9 338,403 - AZOBR_RS31080 0.24 -0.5 338,403 - AZOBR_RS31080 0.24 +1.2 338,674 + AZOBR_RS31080 0.62 -3.0 338,674 + AZOBR_RS31080 0.62 -0.5 338,675 - AZOBR_RS31080 0.62 -1.9 338,991 + +0.0 338,992 - -0.5 339,007 + +1.1 339,008 - -1.2 339,008 - +0.9 339,097 + AZOBR_RS31085 0.12 -2.3 339,097 + AZOBR_RS31085 0.12 -0.9 339,098 - AZOBR_RS31085 0.12 -0.2 339,098 - AZOBR_RS31085 0.12 -0.4 339,098 - AZOBR_RS31085 0.12 +0.4
Or see this region's nucleotide sequence