Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30775 and AZOBR_RS30780 are separated by 31 nucleotides AZOBR_RS30780 and AZOBR_RS30785 are separated by 5 nucleotides AZOBR_RS30785 and AZOBR_RS30790 overlap by 4 nucleotides
AZOBR_RS30775: AZOBR_RS30775 - agmatinase, at 265,114 to 266,169
_RS30775
AZOBR_RS30780: AZOBR_RS30780 - spermidine/putrescine ABC transporter permease, at 266,201 to 266,995
_RS30780
AZOBR_RS30785: AZOBR_RS30785 - ABC transporter permease, at 267,001 to 267,855
_RS30785
AZOBR_RS30790: AZOBR_RS30790 - ABC transporter ATP-binding protein, at 267,852 to 268,913
_RS30790
Position (kb) 266
267 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 265.214 kb on + strand at 265.373 kb on + strand, within AZOBR_RS30775 at 265.373 kb on + strand, within AZOBR_RS30775 at 265.374 kb on - strand, within AZOBR_RS30775 at 265.374 kb on - strand, within AZOBR_RS30775 at 265.475 kb on + strand, within AZOBR_RS30775 at 265.475 kb on + strand, within AZOBR_RS30775 at 265.475 kb on + strand, within AZOBR_RS30775 at 265.476 kb on - strand, within AZOBR_RS30775 at 265.476 kb on - strand, within AZOBR_RS30775 at 265.682 kb on + strand, within AZOBR_RS30775 at 265.745 kb on + strand, within AZOBR_RS30775 at 265.745 kb on + strand, within AZOBR_RS30775 at 265.745 kb on + strand, within AZOBR_RS30775 at 265.746 kb on - strand, within AZOBR_RS30775 at 265.746 kb on - strand, within AZOBR_RS30775 at 265.863 kb on - strand, within AZOBR_RS30775 at 266.129 kb on + strand at 266.129 kb on + strand at 266.130 kb on - strand at 266.322 kb on + strand, within AZOBR_RS30780 at 266.322 kb on + strand, within AZOBR_RS30780 at 266.322 kb on + strand, within AZOBR_RS30780 at 266.322 kb on + strand, within AZOBR_RS30780 at 266.388 kb on + strand, within AZOBR_RS30780 at 266.388 kb on + strand, within AZOBR_RS30780 at 266.389 kb on - strand, within AZOBR_RS30780 at 266.389 kb on - strand, within AZOBR_RS30780 at 266.389 kb on - strand, within AZOBR_RS30780 at 266.389 kb on - strand, within AZOBR_RS30780 at 266.400 kb on + strand, within AZOBR_RS30780 at 266.400 kb on + strand, within AZOBR_RS30780 at 266.400 kb on + strand, within AZOBR_RS30780 at 266.401 kb on - strand, within AZOBR_RS30780 at 266.448 kb on + strand, within AZOBR_RS30780 at 266.449 kb on - strand, within AZOBR_RS30780 at 266.449 kb on - strand, within AZOBR_RS30780 at 266.449 kb on - strand, within AZOBR_RS30780 at 266.526 kb on + strand, within AZOBR_RS30780 at 266.526 kb on + strand, within AZOBR_RS30780 at 266.527 kb on - strand, within AZOBR_RS30780 at 266.527 kb on - strand, within AZOBR_RS30780 at 266.859 kb on + strand, within AZOBR_RS30780 at 266.860 kb on - strand, within AZOBR_RS30780 at 267.110 kb on + strand, within AZOBR_RS30785 at 267.110 kb on + strand, within AZOBR_RS30785 at 267.182 kb on + strand, within AZOBR_RS30785 at 267.183 kb on - strand, within AZOBR_RS30785 at 267.312 kb on - strand, within AZOBR_RS30785 at 267.339 kb on - strand, within AZOBR_RS30785 at 267.371 kb on + strand, within AZOBR_RS30785 at 267.372 kb on - strand, within AZOBR_RS30785 at 267.372 kb on - strand, within AZOBR_RS30785 at 267.372 kb on - strand at 267.585 kb on - strand, within AZOBR_RS30785 at 267.585 kb on - strand, within AZOBR_RS30785 at 267.689 kb on + strand, within AZOBR_RS30785 at 267.689 kb on + strand, within AZOBR_RS30785 at 267.690 kb on - strand, within AZOBR_RS30785 at 267.690 kb on - strand at 267.716 kb on + strand, within AZOBR_RS30785
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 265,214 + -1.6 265,373 + AZOBR_RS30775 0.25 -0.1 265,373 + AZOBR_RS30775 0.25 +1.3 265,374 - AZOBR_RS30775 0.25 -0.0 265,374 - AZOBR_RS30775 0.25 +0.3 265,475 + AZOBR_RS30775 0.34 +1.3 265,475 + AZOBR_RS30775 0.34 +0.1 265,475 + AZOBR_RS30775 0.34 +1.5 265,476 - AZOBR_RS30775 0.34 +0.7 265,476 - AZOBR_RS30775 0.34 -0.4 265,682 + AZOBR_RS30775 0.54 +1.3 265,745 + AZOBR_RS30775 0.60 -0.9 265,745 + AZOBR_RS30775 0.60 +0.3 265,745 + AZOBR_RS30775 0.60 +0.2 265,746 - AZOBR_RS30775 0.60 +0.6 265,746 - AZOBR_RS30775 0.60 +2.3 265,863 - AZOBR_RS30775 0.71 -0.2 266,129 + -1.3 266,129 + -3.6 266,130 - +0.4 266,322 + AZOBR_RS30780 0.15 -0.1 266,322 + AZOBR_RS30780 0.15 +0.4 266,322 + AZOBR_RS30780 0.15 -4.0 266,322 + AZOBR_RS30780 0.15 +0.2 266,388 + AZOBR_RS30780 0.24 -1.1 266,388 + AZOBR_RS30780 0.24 -0.1 266,389 - AZOBR_RS30780 0.24 +0.0 266,389 - AZOBR_RS30780 0.24 +1.2 266,389 - AZOBR_RS30780 0.24 -2.7 266,389 - AZOBR_RS30780 0.24 -1.9 266,400 + AZOBR_RS30780 0.25 +0.0 266,400 + AZOBR_RS30780 0.25 +1.2 266,400 + AZOBR_RS30780 0.25 +0.4 266,401 - AZOBR_RS30780 0.25 -2.1 266,448 + AZOBR_RS30780 0.31 +0.3 266,449 - AZOBR_RS30780 0.31 +1.1 266,449 - AZOBR_RS30780 0.31 -0.5 266,449 - AZOBR_RS30780 0.31 -0.1 266,526 + AZOBR_RS30780 0.41 +0.1 266,526 + AZOBR_RS30780 0.41 -0.0 266,527 - AZOBR_RS30780 0.41 -0.6 266,527 - AZOBR_RS30780 0.41 -0.0 266,859 + AZOBR_RS30780 0.83 +0.6 266,860 - AZOBR_RS30780 0.83 +0.3 267,110 + AZOBR_RS30785 0.13 +2.4 267,110 + AZOBR_RS30785 0.13 -2.5 267,182 + AZOBR_RS30785 0.21 +0.2 267,183 - AZOBR_RS30785 0.21 -3.7 267,312 - AZOBR_RS30785 0.36 -1.0 267,339 - AZOBR_RS30785 0.40 +1.0 267,371 + AZOBR_RS30785 0.43 -2.5 267,372 - AZOBR_RS30785 0.43 +1.0 267,372 - AZOBR_RS30785 0.43 -0.9 267,372 - +0.2 267,585 - AZOBR_RS30785 0.68 +0.7 267,585 - AZOBR_RS30785 0.68 +1.9 267,689 + AZOBR_RS30785 0.80 -0.0 267,689 + AZOBR_RS30785 0.80 -0.1 267,690 - AZOBR_RS30785 0.81 +1.0 267,690 - +2.9 267,716 + AZOBR_RS30785 0.84 +0.7
Or see this region's nucleotide sequence