Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30390

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30385 and AZOBR_RS30390 are separated by 13 nucleotidesAZOBR_RS30390 and AZOBR_RS30395 are separated by 21 nucleotides AZOBR_RS30385: AZOBR_RS30385 - Fis family transcriptional regulator, at 162,291 to 163,634 _RS30385 AZOBR_RS30390: AZOBR_RS30390 - aspartate aminotransferase, at 163,648 to 165,279 _RS30390 AZOBR_RS30395: AZOBR_RS30395 - transporter, at 165,301 to 166,989 _RS30395 Position (kb) 163 164 165 166Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 163.188 kb on + strand, within AZOBR_RS30385at 163.188 kb on + strand, within AZOBR_RS30385at 163.189 kb on - strand, within AZOBR_RS30385at 163.189 kb on - strand, within AZOBR_RS30385at 163.189 kb on - strand, within AZOBR_RS30385at 163.581 kb on + strandat 163.581 kb on + strandat 163.581 kb on + strandat 163.582 kb on - strandat 163.763 kb on + strandat 163.908 kb on - strand, within AZOBR_RS30390at 163.908 kb on - strand, within AZOBR_RS30390at 163.908 kb on - strand, within AZOBR_RS30390at 163.919 kb on + strand, within AZOBR_RS30390at 163.958 kb on + strand, within AZOBR_RS30390at 163.958 kb on + strand, within AZOBR_RS30390at 163.958 kb on + strand, within AZOBR_RS30390at 163.958 kb on + strand, within AZOBR_RS30390at 163.959 kb on - strand, within AZOBR_RS30390at 163.959 kb on - strand, within AZOBR_RS30390at 163.961 kb on + strand, within AZOBR_RS30390at 163.961 kb on + strand, within AZOBR_RS30390at 163.961 kb on + strand, within AZOBR_RS30390at 163.961 kb on + strand, within AZOBR_RS30390at 163.962 kb on - strand, within AZOBR_RS30390at 163.962 kb on - strand, within AZOBR_RS30390at 163.962 kb on - strand, within AZOBR_RS30390at 164.058 kb on - strand, within AZOBR_RS30390at 164.220 kb on - strand, within AZOBR_RS30390at 164.333 kb on + strand, within AZOBR_RS30390at 164.348 kb on + strand, within AZOBR_RS30390at 164.415 kb on - strand, within AZOBR_RS30390at 164.634 kb on - strand, within AZOBR_RS30390at 164.660 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.742 kb on - strand, within AZOBR_RS30390at 164.742 kb on - strand, within AZOBR_RS30390at 164.828 kb on + strand, within AZOBR_RS30390at 164.829 kb on - strand, within AZOBR_RS30390at 164.829 kb on - strand, within AZOBR_RS30390at 164.829 kb on - strand, within AZOBR_RS30390at 164.879 kb on + strand, within AZOBR_RS30390at 164.879 kb on + strand, within AZOBR_RS30390at 164.879 kb on + strand, within AZOBR_RS30390at 164.954 kb on + strand, within AZOBR_RS30390at 164.955 kb on - strand, within AZOBR_RS30390at 164.955 kb on - strand, within AZOBR_RS30390at 165.011 kb on + strand, within AZOBR_RS30390at 165.011 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.075 kb on - strand, within AZOBR_RS30390at 165.263 kb on + strandat 165.359 kb on + strandat 165.359 kb on + strandat 165.491 kb on + strand, within AZOBR_RS30395at 165.701 kb on + strand, within AZOBR_RS30395at 165.824 kb on + strand, within AZOBR_RS30395at 165.824 kb on + strand, within AZOBR_RS30395at 165.825 kb on - strand, within AZOBR_RS30395at 165.825 kb on - strand, within AZOBR_RS30395at 165.825 kb on - strand, within AZOBR_RS30395at 165.825 kb on - strand, within AZOBR_RS30395at 165.905 kb on + strand, within AZOBR_RS30395at 165.905 kb on + strand, within AZOBR_RS30395at 165.906 kb on - strand, within AZOBR_RS30395at 165.989 kb on + strand, within AZOBR_RS30395at 165.989 kb on + strand, within AZOBR_RS30395at 165.989 kb on + strand, within AZOBR_RS30395at 165.990 kb on - strand, within AZOBR_RS30395at 166.001 kb on + strand, within AZOBR_RS30395at 166.002 kb on - strand, within AZOBR_RS30395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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163,188 + AZOBR_RS30385 0.67 -0.4
163,188 + AZOBR_RS30385 0.67 +0.7
163,189 - AZOBR_RS30385 0.67 +0.5
163,189 - AZOBR_RS30385 0.67 +0.3
163,189 - AZOBR_RS30385 0.67 +0.1
163,581 + +0.7
163,581 + +0.1
163,581 + +0.3
163,582 - +0.9
163,763 + +0.2
163,908 - AZOBR_RS30390 0.16 +0.1
163,908 - AZOBR_RS30390 0.16 -0.8
163,908 - AZOBR_RS30390 0.16 +0.5
163,919 + AZOBR_RS30390 0.17 -1.6
163,958 + AZOBR_RS30390 0.19 +0.2
163,958 + AZOBR_RS30390 0.19 -0.0
163,958 + AZOBR_RS30390 0.19 -0.8
163,958 + AZOBR_RS30390 0.19 -2.9
163,959 - AZOBR_RS30390 0.19 +0.1
163,959 - AZOBR_RS30390 0.19 -1.5
163,961 + AZOBR_RS30390 0.19 +1.5
163,961 + AZOBR_RS30390 0.19 -3.9
163,961 + AZOBR_RS30390 0.19 +1.2
163,961 + AZOBR_RS30390 0.19 +0.6
163,962 - AZOBR_RS30390 0.19 -1.8
163,962 - AZOBR_RS30390 0.19 -0.1
163,962 - AZOBR_RS30390 0.19 +0.0
164,058 - AZOBR_RS30390 0.25 -0.3
164,220 - AZOBR_RS30390 0.35 +1.0
164,333 + AZOBR_RS30390 0.42 -0.1
164,348 + AZOBR_RS30390 0.43 -0.1
164,415 - AZOBR_RS30390 0.47 -0.3
164,634 - AZOBR_RS30390 0.60 -0.4
164,660 + AZOBR_RS30390 0.62 +0.2
164,741 + AZOBR_RS30390 0.67 +1.1
164,741 + AZOBR_RS30390 0.67 +0.2
164,741 + AZOBR_RS30390 0.67 -0.6
164,741 + AZOBR_RS30390 0.67 +0.6
164,741 + AZOBR_RS30390 0.67 -0.3
164,741 + AZOBR_RS30390 0.67 -0.1
164,741 + AZOBR_RS30390 0.67 -0.5
164,742 - AZOBR_RS30390 0.67 +1.0
164,742 - AZOBR_RS30390 0.67 +0.6
164,828 + AZOBR_RS30390 0.72 +0.3
164,829 - AZOBR_RS30390 0.72 +0.8
164,829 - AZOBR_RS30390 0.72 +1.1
164,829 - AZOBR_RS30390 0.72 +0.0
164,879 + AZOBR_RS30390 0.75 +1.8
164,879 + AZOBR_RS30390 0.75 -0.7
164,879 + AZOBR_RS30390 0.75 +0.4
164,954 + AZOBR_RS30390 0.80 +0.9
164,955 - AZOBR_RS30390 0.80 +0.0
164,955 - AZOBR_RS30390 0.80 +0.8
165,011 + AZOBR_RS30390 0.84 -1.0
165,011 + AZOBR_RS30390 0.84 -3.2
165,074 + AZOBR_RS30390 0.87 +1.0
165,074 + AZOBR_RS30390 0.87 -3.0
165,074 + AZOBR_RS30390 0.87 -1.5
165,074 + AZOBR_RS30390 0.87 -2.5
165,074 + AZOBR_RS30390 0.87 +0.8
165,075 - AZOBR_RS30390 0.87 -1.2
165,263 + -0.1
165,359 + -0.2
165,359 + +1.0
165,491 + AZOBR_RS30395 0.11 -0.5
165,701 + AZOBR_RS30395 0.24 -1.5
165,824 + AZOBR_RS30395 0.31 +0.0
165,824 + AZOBR_RS30395 0.31 +0.7
165,825 - AZOBR_RS30395 0.31 +0.1
165,825 - AZOBR_RS30395 0.31 -0.3
165,825 - AZOBR_RS30395 0.31 -0.6
165,825 - AZOBR_RS30395 0.31 +0.6
165,905 + AZOBR_RS30395 0.36 +0.3
165,905 + AZOBR_RS30395 0.36 +2.0
165,906 - AZOBR_RS30395 0.36 -2.6
165,989 + AZOBR_RS30395 0.41 +2.5
165,989 + AZOBR_RS30395 0.41 +1.0
165,989 + AZOBR_RS30395 0.41 +0.5
165,990 - AZOBR_RS30395 0.41 +0.1
166,001 + AZOBR_RS30395 0.41 -0.1
166,002 - AZOBR_RS30395 0.42 +0.1

Or see this region's nucleotide sequence