Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29625

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29615 and AZOBR_RS29620 are separated by 11 nucleotidesAZOBR_RS29620 and AZOBR_RS29625 are separated by 114 nucleotidesAZOBR_RS29625 and AZOBR_RS29630 are separated by 121 nucleotides AZOBR_RS29615: AZOBR_RS29615 - arginine ABC transporter ATP-binding protein, at 773,996 to 774,751 _RS29615 AZOBR_RS29620: AZOBR_RS29620 - cyclohexadienyl dehydratase precursor, at 774,763 to 775,602 _RS29620 AZOBR_RS29625: AZOBR_RS29625 - agmatinase, at 775,717 to 776,787 _RS29625 AZOBR_RS29630: AZOBR_RS29630 - amidase hydantoinase/carbamoylase family, at 776,909 to 778,102 _RS29630 Position (kb) 775 776 777Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 774.890 kb on - strand, within AZOBR_RS29620at 774.890 kb on - strand, within AZOBR_RS29620at 774.949 kb on + strand, within AZOBR_RS29620at 774.949 kb on + strand, within AZOBR_RS29620at 774.949 kb on + strand, within AZOBR_RS29620at 774.950 kb on - strand, within AZOBR_RS29620at 774.950 kb on - strand, within AZOBR_RS29620at 774.950 kb on - strand, within AZOBR_RS29620at 774.950 kb on - strand, within AZOBR_RS29620at 774.950 kb on - strand, within AZOBR_RS29620at 775.126 kb on + strand, within AZOBR_RS29620at 775.127 kb on - strand, within AZOBR_RS29620at 775.127 kb on - strand, within AZOBR_RS29620at 775.127 kb on - strand, within AZOBR_RS29620at 775.537 kb on + strandat 775.537 kb on + strandat 775.537 kb on + strandat 775.537 kb on + strandat 775.537 kb on + strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.538 kb on - strandat 775.556 kb on - strandat 775.822 kb on + strandat 775.823 kb on - strandat 775.903 kb on + strand, within AZOBR_RS29625at 775.903 kb on + strand, within AZOBR_RS29625at 775.904 kb on - strand, within AZOBR_RS29625at 775.904 kb on - strand, within AZOBR_RS29625at 775.904 kb on - strand, within AZOBR_RS29625at 775.981 kb on + strand, within AZOBR_RS29625at 775.981 kb on + strand, within AZOBR_RS29625at 775.982 kb on - strand, within AZOBR_RS29625at 776.033 kb on - strand, within AZOBR_RS29625at 776.065 kb on + strand, within AZOBR_RS29625at 776.065 kb on + strand, within AZOBR_RS29625at 776.066 kb on - strand, within AZOBR_RS29625at 776.185 kb on + strand, within AZOBR_RS29625at 776.186 kb on - strand, within AZOBR_RS29625at 776.347 kb on + strand, within AZOBR_RS29625at 776.347 kb on + strand, within AZOBR_RS29625at 776.347 kb on + strand, within AZOBR_RS29625at 776.348 kb on - strand, within AZOBR_RS29625at 776.348 kb on - strand, within AZOBR_RS29625at 776.348 kb on - strand, within AZOBR_RS29625at 776.348 kb on - strand, within AZOBR_RS29625at 776.348 kb on - strand, within AZOBR_RS29625at 776.417 kb on - strand, within AZOBR_RS29625at 776.417 kb on - strand, within AZOBR_RS29625at 776.507 kb on - strand, within AZOBR_RS29625at 776.527 kb on + strand, within AZOBR_RS29625at 776.527 kb on + strand, within AZOBR_RS29625at 776.528 kb on - strand, within AZOBR_RS29625at 776.620 kb on + strand, within AZOBR_RS29625at 776.620 kb on + strand, within AZOBR_RS29625at 776.620 kb on + strand, within AZOBR_RS29625at 776.621 kb on - strand, within AZOBR_RS29625at 776.710 kb on + strandat 776.710 kb on + strandat 776.726 kb on - strandat 776.737 kb on + strandat 776.737 kb on + strandat 776.737 kb on + strandat 776.738 kb on - strandat 776.738 kb on - strandat 776.738 kb on - strandat 776.851 kb on + strandat 776.851 kb on + strandat 776.851 kb on + strandat 776.851 kb on + strandat 776.852 kb on - strandat 777.093 kb on - strand, within AZOBR_RS29630at 777.590 kb on + strand, within AZOBR_RS29630

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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774,890 - AZOBR_RS29620 0.15 -4.2
774,890 - AZOBR_RS29620 0.15 -4.2
774,949 + AZOBR_RS29620 0.22 -0.2
774,949 + AZOBR_RS29620 0.22 +0.4
774,949 + AZOBR_RS29620 0.22 -1.1
774,950 - AZOBR_RS29620 0.22 +1.8
774,950 - AZOBR_RS29620 0.22 +0.4
774,950 - AZOBR_RS29620 0.22 -0.5
774,950 - AZOBR_RS29620 0.22 +0.7
774,950 - AZOBR_RS29620 0.22 +0.3
775,126 + AZOBR_RS29620 0.43 +0.3
775,127 - AZOBR_RS29620 0.43 -0.8
775,127 - AZOBR_RS29620 0.43 -0.3
775,127 - AZOBR_RS29620 0.43 +0.6
775,537 + +0.3
775,537 + +0.4
775,537 + -0.1
775,537 + +0.9
775,537 + +1.0
775,538 - -0.1
775,538 - +2.1
775,538 - +0.6
775,538 - -1.8
775,538 - -0.0
775,538 - +1.1
775,538 - +0.1
775,538 - +2.1
775,538 - +2.0
775,538 - -4.8
775,538 - -1.1
775,538 - +2.1
775,538 - -4.6
775,556 - -0.4
775,822 + -0.5
775,823 - -2.4
775,903 + AZOBR_RS29625 0.17 +1.5
775,903 + AZOBR_RS29625 0.17 -2.7
775,904 - AZOBR_RS29625 0.17 +0.6
775,904 - AZOBR_RS29625 0.17 -0.1
775,904 - AZOBR_RS29625 0.17 +0.3
775,981 + AZOBR_RS29625 0.25 +0.4
775,981 + AZOBR_RS29625 0.25 +1.5
775,982 - AZOBR_RS29625 0.25 -0.1
776,033 - AZOBR_RS29625 0.30 -3.5
776,065 + AZOBR_RS29625 0.32 +1.5
776,065 + AZOBR_RS29625 0.32 -2.3
776,066 - AZOBR_RS29625 0.33 +0.7
776,185 + AZOBR_RS29625 0.44 -1.0
776,186 - AZOBR_RS29625 0.44 -4.8
776,347 + AZOBR_RS29625 0.59 +0.7
776,347 + AZOBR_RS29625 0.59 -0.1
776,347 + AZOBR_RS29625 0.59 +0.5
776,348 - AZOBR_RS29625 0.59 +0.9
776,348 - AZOBR_RS29625 0.59 +1.1
776,348 - AZOBR_RS29625 0.59 -0.5
776,348 - AZOBR_RS29625 0.59 +0.1
776,348 - AZOBR_RS29625 0.59 +0.4
776,417 - AZOBR_RS29625 0.65 +0.3
776,417 - AZOBR_RS29625 0.65 -0.2
776,507 - AZOBR_RS29625 0.74 -0.4
776,527 + AZOBR_RS29625 0.76 +0.3
776,527 + AZOBR_RS29625 0.76 -0.1
776,528 - AZOBR_RS29625 0.76 +1.0
776,620 + AZOBR_RS29625 0.84 +0.7
776,620 + AZOBR_RS29625 0.84 -0.1
776,620 + AZOBR_RS29625 0.84 +1.0
776,621 - AZOBR_RS29625 0.84 -0.3
776,710 + +0.2
776,710 + +0.5
776,726 - +0.1
776,737 + -2.8
776,737 + +0.4
776,737 + -0.0
776,738 - +1.9
776,738 - -0.0
776,738 - -0.5
776,851 + -0.8
776,851 + +1.0
776,851 + +0.1
776,851 + -0.0
776,852 - -0.1
777,093 - AZOBR_RS29630 0.15 -1.7
777,590 + AZOBR_RS29630 0.57 -3.9

Or see this region's nucleotide sequence