Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29540 and AZOBR_RS29545 are separated by 157 nucleotides AZOBR_RS29545 and AZOBR_RS29550 are separated by 234 nucleotides
AZOBR_RS29540: AZOBR_RS29540 - putative auxiliary transport protein MFP family, at 749,305 to 750,390
_RS29540
AZOBR_RS29545: AZOBR_RS29545 - acriflavin resistance protein, at 750,548 to 753,712
_RS29545
AZOBR_RS29550: AZOBR_RS29550 - isochorismate synthase dhbC, at 753,947 to 755,152
_RS29550
Position (kb) 750
751
752
753
754 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 749.849 kb on + strand, within AZOBR_RS29540 at 750.457 kb on + strand at 750.493 kb on + strand at 750.493 kb on + strand at 750.494 kb on - strand at 750.749 kb on + strand at 751.229 kb on + strand, within AZOBR_RS29545 at 751.229 kb on + strand, within AZOBR_RS29545 at 751.229 kb on + strand, within AZOBR_RS29545 at 751.532 kb on + strand, within AZOBR_RS29545 at 751.533 kb on - strand, within AZOBR_RS29545 at 751.533 kb on - strand, within AZOBR_RS29545 at 751.934 kb on + strand, within AZOBR_RS29545 at 751.935 kb on - strand, within AZOBR_RS29545 at 752.160 kb on + strand, within AZOBR_RS29545 at 752.161 kb on - strand, within AZOBR_RS29545 at 752.161 kb on - strand, within AZOBR_RS29545 at 752.252 kb on + strand, within AZOBR_RS29545 at 752.576 kb on + strand, within AZOBR_RS29545 at 752.577 kb on - strand, within AZOBR_RS29545 at 752.744 kb on + strand, within AZOBR_RS29545 at 752.786 kb on + strand, within AZOBR_RS29545 at 752.786 kb on + strand, within AZOBR_RS29545 at 752.786 kb on + strand, within AZOBR_RS29545 at 752.787 kb on - strand, within AZOBR_RS29545 at 752.934 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.177 kb on - strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.279 kb on - strand, within AZOBR_RS29545 at 753.279 kb on - strand, within AZOBR_RS29545 at 753.558 kb on - strand at 753.558 kb on - strand at 753.609 kb on + strand at 753.711 kb on - strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.957 kb on + strand at 754.043 kb on + strand at 754.044 kb on - strand at 754.233 kb on - strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.375 kb on - strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.487 kb on + strand, within AZOBR_RS29550 at 754.658 kb on + strand, within AZOBR_RS29550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 749,849 + AZOBR_RS29540 0.50 +0.7 750,457 + -0.6 750,493 + -0.1 750,493 + -0.0 750,494 - +1.5 750,749 + -3.3 751,229 + AZOBR_RS29545 0.22 +0.5 751,229 + AZOBR_RS29545 0.22 -1.8 751,229 + AZOBR_RS29545 0.22 +0.1 751,532 + AZOBR_RS29545 0.31 +1.1 751,533 - AZOBR_RS29545 0.31 +0.6 751,533 - AZOBR_RS29545 0.31 -2.0 751,934 + AZOBR_RS29545 0.44 +2.4 751,935 - AZOBR_RS29545 0.44 -0.9 752,160 + AZOBR_RS29545 0.51 -0.1 752,161 - AZOBR_RS29545 0.51 +0.0 752,161 - AZOBR_RS29545 0.51 -0.2 752,252 + AZOBR_RS29545 0.54 -0.1 752,576 + AZOBR_RS29545 0.64 +0.3 752,577 - AZOBR_RS29545 0.64 +0.4 752,744 + AZOBR_RS29545 0.69 +0.5 752,786 + AZOBR_RS29545 0.71 -0.5 752,786 + AZOBR_RS29545 0.71 -2.5 752,786 + AZOBR_RS29545 0.71 -0.4 752,787 - AZOBR_RS29545 0.71 -4.0 752,934 + AZOBR_RS29545 0.75 +0.5 753,176 + AZOBR_RS29545 0.83 +0.3 753,176 + AZOBR_RS29545 0.83 -0.3 753,176 + AZOBR_RS29545 0.83 +1.2 753,177 - AZOBR_RS29545 0.83 +0.1 753,278 + AZOBR_RS29545 0.86 +1.5 753,278 + AZOBR_RS29545 0.86 -0.0 753,278 + AZOBR_RS29545 0.86 +1.0 753,279 - AZOBR_RS29545 0.86 +0.3 753,279 - AZOBR_RS29545 0.86 -0.4 753,558 - -0.2 753,558 - -1.5 753,609 + -0.1 753,711 - -3.4 753,810 + -2.6 753,810 + -0.0 753,810 + -1.4 753,810 + +0.5 753,957 + +0.7 754,043 + -0.7 754,044 - -3.4 754,233 - AZOBR_RS29550 0.24 -1.0 754,374 + AZOBR_RS29550 0.35 +0.9 754,374 + AZOBR_RS29550 0.35 -1.1 754,375 - AZOBR_RS29550 0.35 -0.1 754,463 + AZOBR_RS29550 0.43 +0.6 754,463 + AZOBR_RS29550 0.43 -3.6 754,463 + AZOBR_RS29550 0.43 +0.3 754,464 - AZOBR_RS29550 0.43 -1.0 754,464 - AZOBR_RS29550 0.43 -1.9 754,487 + AZOBR_RS29550 0.45 -3.5 754,658 + AZOBR_RS29550 0.59 -0.2
Or see this region's nucleotide sequence