Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29160 and AZOBR_RS29165 are separated by 597 nucleotides
AZOBR_RS29160: AZOBR_RS29160 - putative RNA polymerase sigma-70 factor ECF subfamily, at 666,689 to 667,213
_RS29160
AZOBR_RS29165: AZOBR_RS29165 - hypothetical protein, at 667,811 to 668,326
_RS29165
Position (kb) 667
668
669 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.820 kb on - strand, within AZOBR_RS29160 at 666.820 kb on - strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.377 kb on + strand at 667.396 kb on + strand at 667.454 kb on + strand at 667.882 kb on + strand, within AZOBR_RS29165 at 667.950 kb on + strand, within AZOBR_RS29165 at 667.950 kb on + strand, within AZOBR_RS29165 at 667.951 kb on - strand, within AZOBR_RS29165 at 668.190 kb on + strand, within AZOBR_RS29165 at 668.190 kb on + strand, within AZOBR_RS29165 at 668.191 kb on - strand, within AZOBR_RS29165 at 668.237 kb on + strand, within AZOBR_RS29165 at 668.237 kb on + strand, within AZOBR_RS29165 at 668.237 kb on + strand, within AZOBR_RS29165 at 668.238 kb on - strand, within AZOBR_RS29165 at 668.238 kb on - strand, within AZOBR_RS29165 at 668.342 kb on + strand at 668.371 kb on + strand at 668.372 kb on - strand at 668.489 kb on + strand at 668.621 kb on + strand at 668.621 kb on + strand at 668.710 kb on + strand at 668.710 kb on + strand at 668.710 kb on + strand at 668.710 kb on + strand at 668.710 kb on + strand at 668.711 kb on - strand at 668.711 kb on - strand at 668.711 kb on - strand at 668.715 kb on - strand at 668.715 kb on - strand at 668.764 kb on + strand at 668.764 kb on + strand at 668.876 kb on + strand at 668.877 kb on - strand at 668.957 kb on + strand at 668.957 kb on + strand at 668.957 kb on + strand at 668.958 kb on - strand at 669.149 kb on + strand at 669.207 kb on + strand at 669.207 kb on + strand at 669.207 kb on + strand at 669.207 kb on + strand at 669.208 kb on - strand at 669.242 kb on + strand at 669.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 666,819 + AZOBR_RS29160 0.25 -1.7 666,819 + AZOBR_RS29160 0.25 +0.6 666,819 + AZOBR_RS29160 0.25 +0.7 666,820 - AZOBR_RS29160 0.25 +1.7 666,820 - AZOBR_RS29160 0.25 -4.3 667,020 + AZOBR_RS29160 0.63 -2.5 667,020 + AZOBR_RS29160 0.63 +0.7 667,020 + AZOBR_RS29160 0.63 +0.4 667,020 + AZOBR_RS29160 0.63 -0.9 667,021 - AZOBR_RS29160 0.63 -2.5 667,021 - AZOBR_RS29160 0.63 +1.0 667,021 - AZOBR_RS29160 0.63 -3.1 667,021 - AZOBR_RS29160 0.63 +0.1 667,021 - AZOBR_RS29160 0.63 -3.4 667,021 - AZOBR_RS29160 0.63 +0.3 667,021 - AZOBR_RS29160 0.63 -0.3 667,377 + +0.2 667,396 + -1.7 667,454 + -3.6 667,882 + AZOBR_RS29165 0.14 -3.5 667,950 + AZOBR_RS29165 0.27 -3.5 667,950 + AZOBR_RS29165 0.27 +0.5 667,951 - AZOBR_RS29165 0.27 +0.4 668,190 + AZOBR_RS29165 0.73 -1.4 668,190 + AZOBR_RS29165 0.73 -1.5 668,191 - AZOBR_RS29165 0.74 -2.2 668,237 + AZOBR_RS29165 0.83 -0.6 668,237 + AZOBR_RS29165 0.83 +0.5 668,237 + AZOBR_RS29165 0.83 -3.1 668,238 - AZOBR_RS29165 0.83 +0.2 668,238 - AZOBR_RS29165 0.83 -0.7 668,342 + +1.4 668,371 + -0.7 668,372 - +1.7 668,489 + -0.3 668,621 + +0.0 668,621 + -0.2 668,710 + -0.3 668,710 + +1.5 668,710 + -0.3 668,710 + +1.1 668,710 + -0.6 668,711 - -0.7 668,711 - +0.5 668,711 - +1.2 668,715 - +0.5 668,715 - +0.1 668,764 + +0.9 668,764 + -2.1 668,876 + +0.4 668,877 - -2.2 668,957 + +0.6 668,957 + -1.2 668,957 + +0.2 668,958 - -2.7 669,149 + +0.8 669,207 + -0.2 669,207 + -1.5 669,207 + +0.9 669,207 + +0.2 669,208 - -5.3 669,242 + -2.7 669,243 - +0.4
Or see this region's nucleotide sequence