Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28345 and AZOBR_RS28350 are separated by 8 nucleotides AZOBR_RS28350 and AZOBR_RS28355 are separated by 312 nucleotides
AZOBR_RS28345: AZOBR_RS28345 - phosphoglycerate mutase, at 532,177 to 532,773
_RS28345
AZOBR_RS28350: AZOBR_RS28350 - inositol-3-phosphate synthase, at 532,782 to 533,885
_RS28350
AZOBR_RS28355: AZOBR_RS28355 - dehydratase, at 534,198 to 535,310
_RS28355
Position (kb) 532
533
534 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 531.783 kb on + strand at 531.972 kb on + strand at 531.972 kb on + strand at 531.973 kb on - strand at 532.888 kb on + strand at 532.889 kb on - strand at 532.889 kb on - strand at 533.105 kb on + strand, within AZOBR_RS28350 at 533.106 kb on - strand, within AZOBR_RS28350 at 533.239 kb on + strand, within AZOBR_RS28350 at 533.239 kb on + strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.389 kb on - strand, within AZOBR_RS28350 at 533.446 kb on + strand, within AZOBR_RS28350 at 533.446 kb on + strand, within AZOBR_RS28350 at 533.447 kb on - strand, within AZOBR_RS28350 at 533.447 kb on - strand, within AZOBR_RS28350 at 533.482 kb on + strand, within AZOBR_RS28350 at 533.483 kb on - strand, within AZOBR_RS28350 at 533.706 kb on + strand, within AZOBR_RS28350 at 533.806 kb on + strand at 533.807 kb on - strand at 533.809 kb on + strand at 533.809 kb on + strand at 533.809 kb on + strand at 533.809 kb on + strand at 533.810 kb on - strand at 533.810 kb on - strand at 533.815 kb on - strand at 533.815 kb on - strand at 533.815 kb on - strand at 533.937 kb on - strand at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.377 kb on - strand, within AZOBR_RS28355 at 534.377 kb on - strand, within AZOBR_RS28355 at 534.413 kb on + strand, within AZOBR_RS28355 at 534.413 kb on + strand, within AZOBR_RS28355 at 534.414 kb on - strand, within AZOBR_RS28355 at 534.465 kb on + strand, within AZOBR_RS28355 at 534.480 kb on + strand, within AZOBR_RS28355 at 534.481 kb on - strand, within AZOBR_RS28355 at 534.576 kb on + strand, within AZOBR_RS28355 at 534.738 kb on + strand, within AZOBR_RS28355 at 534.738 kb on + strand, within AZOBR_RS28355 at 534.739 kb on - strand, within AZOBR_RS28355 at 534.754 kb on - strand, within AZOBR_RS28355 at 534.782 kb on + strand, within AZOBR_RS28355 at 534.831 kb on + strand, within AZOBR_RS28355 at 534.861 kb on + strand, within AZOBR_RS28355
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 531,783 + -0.6 531,972 + +0.1 531,972 + -0.8 531,973 - +0.3 532,888 + +0.4 532,889 - -0.9 532,889 - -0.4 533,105 + AZOBR_RS28350 0.29 -0.5 533,106 - AZOBR_RS28350 0.29 +0.8 533,239 + AZOBR_RS28350 0.41 -0.2 533,239 + AZOBR_RS28350 0.41 -0.1 533,240 - AZOBR_RS28350 0.41 +0.7 533,240 - AZOBR_RS28350 0.41 -0.2 533,240 - AZOBR_RS28350 0.41 +0.9 533,240 - AZOBR_RS28350 0.41 -0.8 533,240 - AZOBR_RS28350 0.41 -1.2 533,389 - AZOBR_RS28350 0.55 -1.0 533,446 + AZOBR_RS28350 0.60 -3.4 533,446 + AZOBR_RS28350 0.60 -0.2 533,447 - AZOBR_RS28350 0.60 -0.1 533,447 - AZOBR_RS28350 0.60 +0.2 533,482 + AZOBR_RS28350 0.63 +1.0 533,483 - AZOBR_RS28350 0.63 +0.9 533,706 + AZOBR_RS28350 0.84 -1.1 533,806 + +0.6 533,807 - -0.3 533,809 + -4.2 533,809 + -3.3 533,809 + -1.8 533,809 + -2.9 533,810 - +2.2 533,810 - -0.5 533,815 - +1.2 533,815 - -0.6 533,815 - +1.7 533,937 - +0.2 534,376 + AZOBR_RS28355 0.16 -0.2 534,376 + AZOBR_RS28355 0.16 -0.2 534,376 + AZOBR_RS28355 0.16 +0.9 534,376 + AZOBR_RS28355 0.16 +0.6 534,376 + AZOBR_RS28355 0.16 -0.2 534,376 + AZOBR_RS28355 0.16 -1.8 534,377 - AZOBR_RS28355 0.16 +1.6 534,377 - AZOBR_RS28355 0.16 -0.5 534,413 + AZOBR_RS28355 0.19 -2.7 534,413 + AZOBR_RS28355 0.19 +0.9 534,414 - AZOBR_RS28355 0.19 +0.0 534,465 + AZOBR_RS28355 0.24 -0.6 534,480 + AZOBR_RS28355 0.25 +1.0 534,481 - AZOBR_RS28355 0.25 -0.2 534,576 + AZOBR_RS28355 0.34 -2.7 534,738 + AZOBR_RS28355 0.49 +0.3 534,738 + AZOBR_RS28355 0.49 +0.3 534,739 - AZOBR_RS28355 0.49 +0.2 534,754 - AZOBR_RS28355 0.50 +0.3 534,782 + AZOBR_RS28355 0.52 -0.7 534,831 + AZOBR_RS28355 0.57 +0.7 534,861 + AZOBR_RS28355 0.60 +0.3
Or see this region's nucleotide sequence