Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28335 and AZOBR_RS28340 are separated by 44 nucleotides AZOBR_RS28340 and AZOBR_RS28345 are separated by 834 nucleotides
AZOBR_RS28335: AZOBR_RS28335 - hypothetical protein, at 528,719 to 530,371
_RS28335
AZOBR_RS28340: AZOBR_RS28340 - beta-xylosidase, at 530,416 to 531,342
_RS28340
AZOBR_RS28345: AZOBR_RS28345 - phosphoglycerate mutase, at 532,177 to 532,773
_RS28345
Position (kb) 530
531
532 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 529.642 kb on + strand, within AZOBR_RS28335 at 529.642 kb on + strand, within AZOBR_RS28335 at 529.643 kb on - strand, within AZOBR_RS28335 at 529.643 kb on - strand, within AZOBR_RS28335 at 529.755 kb on + strand, within AZOBR_RS28335 at 529.755 kb on + strand, within AZOBR_RS28335 at 529.756 kb on - strand, within AZOBR_RS28335 at 529.756 kb on - strand, within AZOBR_RS28335 at 529.971 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 530.296 kb on + strand at 530.296 kb on + strand at 530.297 kb on - strand at 530.573 kb on - strand, within AZOBR_RS28340 at 530.765 kb on + strand, within AZOBR_RS28340 at 530.774 kb on + strand, within AZOBR_RS28340 at 530.823 kb on + strand, within AZOBR_RS28340 at 530.837 kb on + strand, within AZOBR_RS28340 at 530.837 kb on + strand, within AZOBR_RS28340 at 530.838 kb on - strand, within AZOBR_RS28340 at 530.840 kb on + strand, within AZOBR_RS28340 at 530.840 kb on + strand, within AZOBR_RS28340 at 530.841 kb on - strand, within AZOBR_RS28340 at 530.841 kb on - strand, within AZOBR_RS28340 at 530.909 kb on + strand, within AZOBR_RS28340 at 531.487 kb on + strand at 531.487 kb on + strand at 531.487 kb on + strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.593 kb on - strand at 531.783 kb on + strand at 531.972 kb on + strand at 531.972 kb on + strand at 531.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 529,642 + AZOBR_RS28335 0.56 +0.2 529,642 + AZOBR_RS28335 0.56 -3.2 529,643 - AZOBR_RS28335 0.56 -0.3 529,643 - AZOBR_RS28335 0.56 +0.3 529,755 + AZOBR_RS28335 0.63 -0.1 529,755 + AZOBR_RS28335 0.63 +1.2 529,756 - AZOBR_RS28335 0.63 -1.0 529,756 - AZOBR_RS28335 0.63 -3.7 529,971 + AZOBR_RS28335 0.76 -0.1 529,992 + AZOBR_RS28335 0.77 +1.1 529,992 + AZOBR_RS28335 0.77 +1.4 529,992 + AZOBR_RS28335 0.77 +0.9 529,992 + AZOBR_RS28335 0.77 +0.5 529,992 + AZOBR_RS28335 0.77 -4.8 529,993 - AZOBR_RS28335 0.77 +0.3 529,993 - AZOBR_RS28335 0.77 +1.1 529,993 - AZOBR_RS28335 0.77 +0.3 529,993 - AZOBR_RS28335 0.77 +1.1 530,296 + +0.5 530,296 + -0.1 530,297 - -0.0 530,573 - AZOBR_RS28340 0.17 +0.2 530,765 + AZOBR_RS28340 0.38 +0.3 530,774 + AZOBR_RS28340 0.39 -2.3 530,823 + AZOBR_RS28340 0.44 -1.0 530,837 + AZOBR_RS28340 0.45 -0.1 530,837 + AZOBR_RS28340 0.45 +0.6 530,838 - AZOBR_RS28340 0.46 -0.1 530,840 + AZOBR_RS28340 0.46 -0.1 530,840 + AZOBR_RS28340 0.46 +0.1 530,841 - AZOBR_RS28340 0.46 +0.9 530,841 - AZOBR_RS28340 0.46 -1.6 530,909 + AZOBR_RS28340 0.53 -1.4 531,487 + -0.0 531,487 + -1.1 531,487 + +0.8 531,488 - -3.6 531,488 - -0.3 531,488 - -0.5 531,488 - -2.5 531,488 - +0.5 531,488 - +1.4 531,488 - -0.7 531,593 - -0.9 531,783 + -0.6 531,972 + +0.1 531,972 + -0.8 531,973 - +0.3
Or see this region's nucleotide sequence