Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28330 and AZOBR_RS28335 are separated by 202 nucleotides AZOBR_RS28335 and AZOBR_RS28340 are separated by 44 nucleotides
AZOBR_RS28330: AZOBR_RS28330 - potassium channel protein, at 527,434 to 528,516
_RS28330
AZOBR_RS28335: AZOBR_RS28335 - hypothetical protein, at 528,719 to 530,371
_RS28335
AZOBR_RS28340: AZOBR_RS28340 - beta-xylosidase, at 530,416 to 531,342
_RS28340
Position (kb) 528
529
530
531 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 527.772 kb on - strand, within AZOBR_RS28330 at 527.772 kb on - strand, within AZOBR_RS28330 at 527.868 kb on + strand, within AZOBR_RS28330 at 527.868 kb on + strand, within AZOBR_RS28330 at 527.869 kb on - strand, within AZOBR_RS28330 at 528.241 kb on + strand, within AZOBR_RS28330 at 528.242 kb on - strand, within AZOBR_RS28330 at 528.444 kb on + strand at 528.444 kb on + strand at 528.515 kb on - strand at 528.619 kb on - strand at 528.684 kb on + strand at 528.684 kb on + strand at 528.684 kb on + strand at 528.684 kb on + strand at 528.756 kb on + strand at 529.168 kb on - strand, within AZOBR_RS28335 at 529.168 kb on - strand, within AZOBR_RS28335 at 529.168 kb on - strand, within AZOBR_RS28335 at 529.168 kb on - strand, within AZOBR_RS28335 at 529.642 kb on + strand, within AZOBR_RS28335 at 529.642 kb on + strand, within AZOBR_RS28335 at 529.643 kb on - strand, within AZOBR_RS28335 at 529.643 kb on - strand, within AZOBR_RS28335 at 529.755 kb on + strand, within AZOBR_RS28335 at 529.755 kb on + strand, within AZOBR_RS28335 at 529.756 kb on - strand, within AZOBR_RS28335 at 529.756 kb on - strand, within AZOBR_RS28335 at 529.971 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 530.296 kb on + strand at 530.296 kb on + strand at 530.297 kb on - strand at 530.573 kb on - strand, within AZOBR_RS28340 at 530.765 kb on + strand, within AZOBR_RS28340 at 530.774 kb on + strand, within AZOBR_RS28340 at 530.823 kb on + strand, within AZOBR_RS28340 at 530.837 kb on + strand, within AZOBR_RS28340 at 530.837 kb on + strand, within AZOBR_RS28340 at 530.838 kb on - strand, within AZOBR_RS28340 at 530.840 kb on + strand, within AZOBR_RS28340 at 530.840 kb on + strand, within AZOBR_RS28340 at 530.841 kb on - strand, within AZOBR_RS28340 at 530.841 kb on - strand, within AZOBR_RS28340 at 530.909 kb on + strand, within AZOBR_RS28340
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 527,772 - AZOBR_RS28330 0.31 -0.5 527,772 - AZOBR_RS28330 0.31 -1.0 527,868 + AZOBR_RS28330 0.40 -0.2 527,868 + AZOBR_RS28330 0.40 -0.4 527,869 - AZOBR_RS28330 0.40 -0.9 528,241 + AZOBR_RS28330 0.75 +0.3 528,242 - AZOBR_RS28330 0.75 -3.0 528,444 + +1.9 528,444 + -3.6 528,515 - +1.0 528,619 - -0.7 528,684 + +0.5 528,684 + +0.4 528,684 + -3.7 528,684 + +2.6 528,756 + +0.9 529,168 - AZOBR_RS28335 0.27 -1.3 529,168 - AZOBR_RS28335 0.27 -0.2 529,168 - AZOBR_RS28335 0.27 -4.1 529,168 - AZOBR_RS28335 0.27 -1.3 529,642 + AZOBR_RS28335 0.56 +0.2 529,642 + AZOBR_RS28335 0.56 -3.2 529,643 - AZOBR_RS28335 0.56 -0.3 529,643 - AZOBR_RS28335 0.56 +0.3 529,755 + AZOBR_RS28335 0.63 -0.1 529,755 + AZOBR_RS28335 0.63 +1.2 529,756 - AZOBR_RS28335 0.63 -1.0 529,756 - AZOBR_RS28335 0.63 -3.7 529,971 + AZOBR_RS28335 0.76 -0.1 529,992 + AZOBR_RS28335 0.77 +1.1 529,992 + AZOBR_RS28335 0.77 +1.4 529,992 + AZOBR_RS28335 0.77 +0.9 529,992 + AZOBR_RS28335 0.77 +0.5 529,992 + AZOBR_RS28335 0.77 -4.8 529,993 - AZOBR_RS28335 0.77 +0.3 529,993 - AZOBR_RS28335 0.77 +1.1 529,993 - AZOBR_RS28335 0.77 +0.3 529,993 - AZOBR_RS28335 0.77 +1.1 530,296 + +0.5 530,296 + -0.1 530,297 - -0.0 530,573 - AZOBR_RS28340 0.17 +0.2 530,765 + AZOBR_RS28340 0.38 +0.3 530,774 + AZOBR_RS28340 0.39 -2.3 530,823 + AZOBR_RS28340 0.44 -1.0 530,837 + AZOBR_RS28340 0.45 -0.1 530,837 + AZOBR_RS28340 0.45 +0.6 530,838 - AZOBR_RS28340 0.46 -0.1 530,840 + AZOBR_RS28340 0.46 -0.1 530,840 + AZOBR_RS28340 0.46 +0.1 530,841 - AZOBR_RS28340 0.46 +0.9 530,841 - AZOBR_RS28340 0.46 -1.6 530,909 + AZOBR_RS28340 0.53 -1.4
Or see this region's nucleotide sequence