Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27305 and AZOBR_RS27310 are separated by 50 nucleotides AZOBR_RS27310 and AZOBR_RS27315 are separated by 200 nucleotides AZOBR_RS27315 and AZOBR_RS27320 are separated by 26 nucleotides
AZOBR_RS27305: AZOBR_RS27305 - hypothetical protein, at 269,088 to 270,512
_RS27305
AZOBR_RS27310: AZOBR_RS27310 - chitinase, at 270,563 to 271,510
_RS27310
AZOBR_RS27315: AZOBR_RS27315 - RNA polymerase sigma 70, at 271,711 to 272,217
_RS27315
AZOBR_RS27320: AZOBR_RS27320 - hypothetical protein, at 272,244 to 272,639
_RS27320
Position (kb) 270
271
272 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 269.604 kb on + strand, within AZOBR_RS27305 at 269.604 kb on + strand, within AZOBR_RS27305 at 270.288 kb on + strand, within AZOBR_RS27305 at 270.310 kb on - strand, within AZOBR_RS27305 at 270.426 kb on + strand at 270.426 kb on + strand at 270.427 kb on - strand at 270.427 kb on - strand at 270.427 kb on - strand at 270.427 kb on - strand at 270.446 kb on - strand at 270.626 kb on + strand at 270.627 kb on - strand at 270.764 kb on + strand, within AZOBR_RS27310 at 270.860 kb on + strand, within AZOBR_RS27310 at 270.860 kb on + strand, within AZOBR_RS27310 at 270.861 kb on - strand, within AZOBR_RS27310 at 270.861 kb on - strand, within AZOBR_RS27310 at 270.861 kb on - strand, within AZOBR_RS27310 at 270.861 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.206 kb on - strand, within AZOBR_RS27310 at 271.250 kb on + strand, within AZOBR_RS27310 at 271.322 kb on + strand, within AZOBR_RS27310 at 271.323 kb on - strand, within AZOBR_RS27310 at 271.391 kb on + strand, within AZOBR_RS27310 at 271.391 kb on + strand, within AZOBR_RS27310 at 271.619 kb on + strand at 271.619 kb on + strand at 271.759 kb on + strand at 271.760 kb on - strand at 271.834 kb on + strand, within AZOBR_RS27315 at 271.834 kb on + strand, within AZOBR_RS27315 at 271.834 kb on + strand, within AZOBR_RS27315 at 271.834 kb on + strand, within AZOBR_RS27315 at 271.835 kb on - strand, within AZOBR_RS27315 at 271.835 kb on - strand, within AZOBR_RS27315 at 271.835 kb on - strand, within AZOBR_RS27315 at 271.835 kb on - strand, within AZOBR_RS27315 at 271.888 kb on + strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.889 kb on - strand, within AZOBR_RS27315 at 271.894 kb on + strand, within AZOBR_RS27315
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 269,604 + AZOBR_RS27305 0.36 +2.3 269,604 + AZOBR_RS27305 0.36 +1.2 270,288 + AZOBR_RS27305 0.84 +0.2 270,310 - AZOBR_RS27305 0.86 -3.1 270,426 + -0.9 270,426 + -1.7 270,427 - -1.5 270,427 - +0.6 270,427 - +1.0 270,427 - -2.0 270,446 - +0.6 270,626 + -0.1 270,627 - -0.1 270,764 + AZOBR_RS27310 0.21 -4.3 270,860 + AZOBR_RS27310 0.31 +0.4 270,860 + AZOBR_RS27310 0.31 -5.5 270,861 - AZOBR_RS27310 0.31 -0.3 270,861 - AZOBR_RS27310 0.31 -4.1 270,861 - AZOBR_RS27310 0.31 -3.3 270,861 - AZOBR_RS27310 0.31 +1.5 271,206 - AZOBR_RS27310 0.68 -3.6 271,206 - AZOBR_RS27310 0.68 +0.9 271,206 - AZOBR_RS27310 0.68 -0.5 271,206 - AZOBR_RS27310 0.68 +0.6 271,206 - AZOBR_RS27310 0.68 +0.7 271,250 + AZOBR_RS27310 0.72 -0.4 271,322 + AZOBR_RS27310 0.80 +1.3 271,323 - AZOBR_RS27310 0.80 +0.8 271,391 + AZOBR_RS27310 0.87 +0.8 271,391 + AZOBR_RS27310 0.87 -0.2 271,619 + -1.1 271,619 + +0.4 271,759 + -1.3 271,760 - +1.3 271,834 + AZOBR_RS27315 0.24 +0.5 271,834 + AZOBR_RS27315 0.24 -2.3 271,834 + AZOBR_RS27315 0.24 -1.1 271,834 + AZOBR_RS27315 0.24 +0.6 271,835 - AZOBR_RS27315 0.24 -0.8 271,835 - AZOBR_RS27315 0.24 +0.7 271,835 - AZOBR_RS27315 0.24 -3.5 271,835 - AZOBR_RS27315 0.24 +1.5 271,888 + AZOBR_RS27315 0.35 -0.4 271,889 - AZOBR_RS27315 0.35 +0.3 271,889 - AZOBR_RS27315 0.35 +0.3 271,889 - AZOBR_RS27315 0.35 +0.8 271,889 - AZOBR_RS27315 0.35 +0.3 271,889 - AZOBR_RS27315 0.35 +0.3 271,894 + AZOBR_RS27315 0.36 +0.0
Or see this region's nucleotide sequence