Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26450 and AZOBR_RS26455 are separated by 225 nucleotides AZOBR_RS26455 and AZOBR_RS26460 are separated by 34 nucleotides AZOBR_RS26460 and AZOBR_RS26465 are separated by 95 nucleotides
AZOBR_RS26450: AZOBR_RS26450 - short-chain dehydrogenase, at 79,549 to 80,298
_RS26450
AZOBR_RS26455: AZOBR_RS26455 - LysR family transcriptional regulator, at 80,524 to 81,462
_RS26455
AZOBR_RS26460: AZOBR_RS26460 - hypothetical protein, at 81,497 to 82,126
_RS26460
AZOBR_RS26465: AZOBR_RS26465 - MmgE/PrpD family protein 4, at 82,222 to 83,481
_RS26465
Position (kb) 80
81
82 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 79.598 kb on + strand at 79.598 kb on + strand at 79.599 kb on - strand at 79.599 kb on - strand at 79.946 kb on + strand, within AZOBR_RS26450 at 79.946 kb on + strand, within AZOBR_RS26450 at 79.946 kb on + strand, within AZOBR_RS26450 at 79.946 kb on + strand, within AZOBR_RS26450 at 79.946 kb on + strand, within AZOBR_RS26450 at 79.946 kb on + strand, within AZOBR_RS26450 at 79.947 kb on - strand, within AZOBR_RS26450 at 79.985 kb on + strand, within AZOBR_RS26450 at 79.985 kb on + strand, within AZOBR_RS26450 at 79.986 kb on - strand, within AZOBR_RS26450 at 79.986 kb on - strand, within AZOBR_RS26450 at 79.986 kb on - strand, within AZOBR_RS26450 at 80.482 kb on + strand at 80.963 kb on - strand, within AZOBR_RS26455 at 80.963 kb on - strand, within AZOBR_RS26455 at 80.963 kb on - strand, within AZOBR_RS26455 at 81.499 kb on - strand at 81.643 kb on - strand at 81.801 kb on + strand, within AZOBR_RS26460 at 81.802 kb on - strand, within AZOBR_RS26460 at 81.802 kb on - strand, within AZOBR_RS26460 at 81.960 kb on + strand, within AZOBR_RS26460 at 81.961 kb on - strand at 81.961 kb on - strand, within AZOBR_RS26460 at 81.967 kb on - strand, within AZOBR_RS26460 at 81.967 kb on - strand, within AZOBR_RS26460 at 82.024 kb on + strand, within AZOBR_RS26460 at 82.026 kb on + strand, within AZOBR_RS26460 at 82.298 kb on + strand at 82.299 kb on - strand at 82.389 kb on + strand, within AZOBR_RS26465 at 82.390 kb on - strand, within AZOBR_RS26465 at 82.390 kb on - strand, within AZOBR_RS26465
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 79,598 + -2.0 79,598 + +0.6 79,599 - +1.3 79,599 - -0.3 79,946 + AZOBR_RS26450 0.53 -0.2 79,946 + AZOBR_RS26450 0.53 +0.7 79,946 + AZOBR_RS26450 0.53 -0.2 79,946 + AZOBR_RS26450 0.53 +0.4 79,946 + AZOBR_RS26450 0.53 -3.4 79,946 + AZOBR_RS26450 0.53 -0.1 79,947 - AZOBR_RS26450 0.53 -4.4 79,985 + AZOBR_RS26450 0.58 -0.5 79,985 + AZOBR_RS26450 0.58 -1.8 79,986 - AZOBR_RS26450 0.58 +0.3 79,986 - AZOBR_RS26450 0.58 -0.3 79,986 - AZOBR_RS26450 0.58 +0.5 80,482 + +0.5 80,963 - AZOBR_RS26455 0.47 +1.4 80,963 - AZOBR_RS26455 0.47 -4.8 80,963 - AZOBR_RS26455 0.47 +0.9 81,499 - -0.9 81,643 - -1.3 81,801 + AZOBR_RS26460 0.48 -1.2 81,802 - AZOBR_RS26460 0.48 -0.2 81,802 - AZOBR_RS26460 0.48 +1.2 81,960 + AZOBR_RS26460 0.73 -0.3 81,961 - -1.4 81,961 - AZOBR_RS26460 0.74 +0.6 81,967 - AZOBR_RS26460 0.75 -0.1 81,967 - AZOBR_RS26460 0.75 -0.1 82,024 + AZOBR_RS26460 0.84 -0.5 82,026 + AZOBR_RS26460 0.84 +2.0 82,298 + +2.4 82,299 - +0.0 82,389 + AZOBR_RS26465 0.13 +0.9 82,390 - AZOBR_RS26465 0.13 +0.0 82,390 - AZOBR_RS26465 0.13 +0.5
Or see this region's nucleotide sequence