Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24535 and AZOBR_RS24540 are separated by 13 nucleotides AZOBR_RS24540 and AZOBR_RS24545 overlap by 4 nucleotides AZOBR_RS24545 and AZOBR_RS24550 are separated by 13 nucleotides
AZOBR_RS24535: AZOBR_RS24535 - formylmethanofuran dehydrogenase subunit A, at 562,501 to 564,162
_RS24535
AZOBR_RS24540: AZOBR_RS24540 - formylmethanofuran--tetrahydromethanopterin formyltransferase, at 564,176 to 565,075
_RS24540
AZOBR_RS24545: AZOBR_RS24545 - putative formylmethanofuran dehydrogenase subunit C, at 565,072 to 565,896
_RS24545
AZOBR_RS24550: AZOBR_RS24550 - branched-chain amino acid ABC transporter substrate-binding protein, at 565,910 to 567,100
_RS24550
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 563.668 kb on + strand, within AZOBR_RS24535 at 563.780 kb on - strand, within AZOBR_RS24535 at 563.888 kb on - strand, within AZOBR_RS24535 at 564.019 kb on + strand at 564.020 kb on - strand at 564.540 kb on - strand, within AZOBR_RS24540 at 564.587 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.807 kb on - strand, within AZOBR_RS24540 at 565.348 kb on + strand, within AZOBR_RS24545 at 565.839 kb on + strand at 566.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 563,668 + AZOBR_RS24535 0.70 +0.0 563,780 - AZOBR_RS24535 0.77 -1.3 563,888 - AZOBR_RS24535 0.83 -2.3 564,019 + +0.4 564,020 - -0.8 564,540 - AZOBR_RS24540 0.40 -0.7 564,587 + AZOBR_RS24540 0.46 +0.4 564,806 + AZOBR_RS24540 0.70 -1.4 564,806 + AZOBR_RS24540 0.70 -1.1 564,806 + AZOBR_RS24540 0.70 -2.4 564,806 + AZOBR_RS24540 0.70 +0.9 564,806 + AZOBR_RS24540 0.70 +0.2 564,806 + AZOBR_RS24540 0.70 +0.9 564,806 + AZOBR_RS24540 0.70 +1.5 564,807 - AZOBR_RS24540 0.70 -3.0 565,348 + AZOBR_RS24545 0.33 +0.0 565,839 + +0.5 566,004 - +1.0
Or see this region's nucleotide sequence